View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_8 (Length: 501)
Name: NF3963_high_8
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_8 |
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| [»] scaffold0010 (1 HSPs) |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 193 - 490
Target Start/End: Original strand, 54425164 - 54425451
Alignment:
| Q |
193 |
gaccaatttgatattttatagttatatatgaaactctacaaaaac--ccgtgcatcgcacgtgttggattggagtctaaaaatgatctatctattactag |
290 |
Q |
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| T |
54425164 |
gaccaatttgatattttatact---atatgaaactctacaaaaaaaaccgtgcatcgcacgtgttgga-----gtctaaaaat----tatctattacaat |
54425251 |
T |
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| Q |
291 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagaagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaata |
390 |
Q |
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| T |
54425252 |
ggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatggaagtagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaaca |
54425351 |
T |
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| Q |
391 |
tcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
490 |
Q |
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| T |
54425352 |
tcctatctcgactcagctttgaagatcaatggcgcggttcgttgcttgtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
54425451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 54424799 - 54424980
Alignment:
| Q |
17 |
aagatgtgactagagcacggtcaatgcgagcttccttggaggagggcgtgccgatgctcttgaaccatgtgaattggtaaccatgaagaggcatatcaaa |
116 |
Q |
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| T |
54424799 |
aagatgtgactagagcacggtcaatgcgagtttccttggaggagggcgtgccgatgctcttgaaccatgtgaattggcaaccatgaagaggcatatcaaa |
54424898 |
T |
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| Q |
117 |
taagttgcagttttttacagcatc-------cctctaatgacccaggaaggacggtctggaccacctctacgattaataata |
191 |
Q |
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| T |
54424899 |
taagttgcagtcttttacaacatcttggaatcctctaatgagccacgaaggacggtctggaccacctctacgattaataata |
54424980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 488
Target Start/End: Complemental strand, 54430430 - 54430299
Alignment:
| Q |
357 |
tggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttca |
456 |
Q |
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| T |
54430430 |
tggggcgagttatctcgagattgcctcatcaacatcttcattcgactcaccgttgaagatcaatggcgcggtgcaatgcttgtatgtaaatcatggttca |
54430331 |
T |
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| Q |
457 |
acgccttcaaggaagaaccatctcttcactct |
488 |
Q |
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| T |
54430330 |
gtgcctttaaggaagaaccttctcttcactct |
54430299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 20120043 - 20119878
Alignment:
| Q |
17 |
aagatgtgactagagcacggtcaatgcgagcttccttggaggagggcgtgccgatgctcttgaaccatgtgaattggtaaccatgaagaggcatatcaaa |
116 |
Q |
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| T |
20120043 |
aagatgtgaccaaagcacgatcaatacgggcttccttggaagagggtgtgccgatgctcttgaaccatgtgaattggtaactgtggagaggcatatcaaa |
20119944 |
T |
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| Q |
117 |
taagttgcagttttttacagcatc-------cctctaatgacccaggaaggacggtctggaccacc |
175 |
Q |
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| T |
20119943 |
taagttgcagtctttaacagcatcttggaagcctctaatgagccaagaaggacggtctggaccacc |
20119878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 37381841 - 37381911
Alignment:
| Q |
175 |
ctctacgattaataatatgaccaatttgatattttatagttatatatgaaactctacaaaaacccgtgcatcgcacg |
251 |
Q |
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| T |
37381841 |
ctctacgattaataatatagtcaatttgatattttat------atatgaaactctacaaaaacacgtgcatcgcacg |
37381911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 240105 - 240176
Alignment:
| Q |
28 |
agagcacggtcaatgcgagcttccttggaggagggcgtgccgatgctcttgaaccatgtgaattggtaacca |
99 |
Q |
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| T |
240105 |
agagcacggtcaatgcgggcttccttcgaagagtgagttccgatacttttgaaccatgtgtattggtaacca |
240176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 19833 - 19789
Alignment:
| Q |
210 |
atagttatatatgaaactctacaaaaacccgtgcatcgcacgtgtt |
255 |
Q |
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| T |
19833 |
atagttatatatgaaactctac-aaaacctgtgcatcgcacgtgtt |
19789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 30694392 - 30694356
Alignment:
| Q |
214 |
ttatatatgaaactctacaaaaacccgtgcatcgcacg |
251 |
Q |
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| T |
30694392 |
ttatatatgaaactctac-aaaacccgtgcatcgcacg |
30694356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 15107465 - 15107429
Alignment:
| Q |
175 |
ctctacgattaataatatgaccaatttgatattttat |
211 |
Q |
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| T |
15107465 |
ctctacgattaataatatagccaatttgatattttat |
15107429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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