View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_high_9 (Length: 494)
Name: NF3963_high_9
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 2829614 - 2829140
Alignment:
| Q |
1 |
acagaagctgaaaactagggtagtgaagaagaatctaaatcctaagtggaatgacgacttgacattaaccatttcagatcctcatactccaattcatcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829614 |
acagaagctgaaaactagggtagtgaagaagaatctaaatcctaagtggaatgacgacttgacattaaccatttcagatcctcatactccaattcatcta |
2829515 |
T |
|
| Q |
101 |
catgtgtacgataaggacagatttagcatggatgacaaaatgggggatgctgagtttgacatcagtccatttgtggaagcagtaaagatgcggttgcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829514 |
catgtgtacgataaggacagatttagcatggatgacaaaatgggggatgctgagtttgacatcagtccatttgtggaagcagtaaagatgcggttgcaag |
2829415 |
T |
|
| Q |
201 |
gtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtcacattgttttgaaaaatggtaaagttgtcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829414 |
gtctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtcacattgttttgaaaaatggtaaagttgtcca |
2829315 |
T |
|
| Q |
301 |
aaacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattgacattcctggttcaaaggctctttaggttacaaaa |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829314 |
aaagttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattgacattcctggttcaaaggctctttaggttacaaaa |
2829215 |
T |
|
| Q |
401 |
tatttcttcttggcatttatgttgtcattagcacgctatagcggtgctatggtggaatggtgtagaggtggtcgg |
475 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2829214 |
tatttcttcttggcatttatgttgtcattagcgcgctatagcggtgctatggtggaatggcatagaggtggtcgg |
2829140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 102 - 402
Target Start/End: Complemental strand, 30182848 - 30182548
Alignment:
| Q |
102 |
atgtgtacgataaggacagatttagcatggatgacaaaatgggggatgctgagtttgacatcagtccatttgtggaagcagtaaagatgcggttgcaagg |
201 |
Q |
| |
|
||||||| |||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||| | |||||| | |||||||| |||||||||||| ||| |
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| T |
30182848 |
atgtgtatgataaggacacattcagcttggatgacaaaatgggggacgctgagtttgacatcggcccattttttgaagcagtgaagatgcggttggcagg |
30182749 |
T |
|
| Q |
202 |
tctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtcacattgttttgaaaaatggtaaagttgtccaa |
301 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||| || ||||| |
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| T |
30182748 |
tctcccaaatgaggctatagttacaagggtgcaacctagcagacaaaattgcttagcagaagagagtcacattgtttggaaagatggtaaaattttccaa |
30182649 |
T |
|
| Q |
302 |
aacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggattgacattcctggttcaaaggctctttaggttacaaaat |
401 |
Q |
| |
|
||| ||||||||||| |||||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||||| | | |||||||| |||| |
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| T |
30182648 |
aacatggttcttagactaagaaatgtcgaatgtggggaagtggaactccagttgcactgggttgacattcctggttcaaaggttatgtaggttaccaaat |
30182549 |
T |
|
| Q |
402 |
a |
402 |
Q |
| |
|
| |
|
|
| T |
30182548 |
a |
30182548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 102 - 313
Target Start/End: Complemental strand, 30055349 - 30055138
Alignment:
| Q |
102 |
atgtgtacgataaggacagatttagcatggatgacaaaatgggggatgctgagtttgacatcagtccatttgtggaagcagtaaagatgcggttgcaagg |
201 |
Q |
| |
|
||||||| |||||||||| || ||| ||| |||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||| ||| |
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|
| T |
30055349 |
atgtgtatgataaggacacgttcagctaggacgacaaaatgggggatgctgagtttgacatcggcccattttttgaagcagtaaagatgcggttgacagg |
30055250 |
T |
|
| Q |
202 |
tctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtcacattgttttgaaaaatggtaaagttgtccaa |
301 |
Q |
| |
|
||||||||| || |||| |||| |||||||||||||| |||||||| || ||||||| ||||||| ||||||||| |||| |||||||| || ||||| |
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|
| T |
30055249 |
tctcccaaacgaggttatagttacgagggtgcaacctagtagacaaaactgcttagcagaagagagttacattgtttagaaagatggtaaaattttccaa |
30055150 |
T |
|
| Q |
302 |
aacttggttctt |
313 |
Q |
| |
|
||| || ||||| |
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| T |
30055149 |
aacatgattctt |
30055138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 102 - 269
Target Start/End: Complemental strand, 30181366 - 30181204
Alignment:
| Q |
102 |
atgtgtacgataaggacagatttagcatggatgacaaaatgggggatgctgagtttgacatcagtccatttgtggaagcagtaaagatgcggttgcaagg |
201 |
Q |
| |
|
||||||| || ||| ||| ||||| |||||| || |||||||||||||||||||||||||| || |||||| |||||||||||||||| |||| |
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| T |
30181366 |
atgtgtaagacaagaacacatttaacatggacgatgaaatgggggatgctgagtttgacatcggttaatttgtt-----agtaaagatgcggttggaagg |
30181272 |
T |
|
| Q |
202 |
tctcccaaatgatactataattacaagggtgcaacctagcagacaaaattgtttagcaggagagagtc |
269 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||||||||||||| || ||||||| |||||||| |
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|
| T |
30181271 |
tctcccaaacgatactatggttacaagggtccaacctagcagacaaaactgcttagcagaagagagtc |
30181204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 30183510 - 30183413
Alignment:
| Q |
2 |
cagaagctgaaaactagggtagtgaagaagaatctaaatcctaagtggaatgacgacttgacattaaccatttcagatcctcatactccaattcatct |
99 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||| |||||||||| |||||||| ||| |||||||||| |||||||||||||| ||||| |
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|
| T |
30183510 |
cagaagctgaagactagggtcgtgaagaagaatctaaatcctgagtggaatgaggacttgactttatccatttcagaccctcatactccaatccatct |
30183413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 345
Target Start/End: Complemental strand, 30129148 - 30129079
Alignment:
| Q |
277 |
tttgaaaa-atggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtgga |
345 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
30129148 |
tttgaaaagatggtaaaattttccaaaacatggttcttagactaagaaatgttgaatgtgaggaagtgga |
30129079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 30130037 - 30129929
Alignment:
| Q |
125 |
agcatggatgacaaaatgggggatgctgagtttga----catcagtccatttgtggaagcagtaaagatgcggttgcaaggtctcccaaatgatactata |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||| |||||||| | |||||| ||||||| | |||| |||| |||||||||| ||||| |
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|
| T |
30130037 |
agcatggatgacaaaatgggggttgctgagtttgagattgatcggtccattttttgaagcaataaagatacagttggaaggcatcccaaatgaggctata |
30129938 |
T |
|
| Q |
221 |
attacaagg |
229 |
Q |
| |
|
|||||||| |
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|
| T |
30129937 |
gttacaagg |
30129929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 45348535 - 45348613
Alignment:
| Q |
285 |
atggtaaagttgtccaaaacttggttcttagattaagaaatgttgaatgtggggaagtggagattcaattgcattggat |
363 |
Q |
| |
|
|||| |||||||||||| | | || |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
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|
| T |
45348535 |
atggcaaagttgtccaagatgttgtccttagattgagaaatgttgaatgtggtgaagtggaaattcaattgcaatggat |
45348613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 45348366 - 45348410
Alignment:
| Q |
116 |
gacagatttagcatggatgacaaaatgggggatgctgagtttgac |
160 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
45348366 |
gacacatttagcaaagatgacaaaatgggagatgctgagtttgac |
45348410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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