View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_low_10 (Length: 493)

Name: NF3963_low_10
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_low_10
NF3963_low_10
[»] chr2 (2 HSPs)
chr2 (13-465)||(44147630-44148083)
chr2 (365-443)||(40959680-40959758)
[»] chr1 (2 HSPs)
chr1 (298-419)||(42423152-42423272)
chr1 (338-376)||(8382008-8382046)
[»] chr8 (1 HSPs)
chr8 (298-373)||(2764434-2764509)
[»] chr6 (2 HSPs)
chr6 (313-376)||(882728-882791)
chr6 (340-373)||(34063139-34063172)
[»] chr7 (1 HSPs)
chr7 (326-376)||(38123659-38123709)
[»] chr5 (4 HSPs)
chr5 (399-428)||(10373466-10373495)
chr5 (318-427)||(42858100-42858208)
chr5 (348-424)||(10859853-10859929)
chr5 (338-374)||(14299579-14299615)
[»] chr4 (2 HSPs)
chr4 (403-448)||(25319018-25319063)
chr4 (338-374)||(32100336-32100372)
[»] scaffold0036 (1 HSPs)
scaffold0036 (135-191)||(7973-8029)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 44147630 - 44148083
Alignment:
Q  13 aatatataaaacagcctaaaataatatgcatgtagagcataaatgttacaagtactttcagaaaagtagtaacagatatttattgcttataataagcaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147630 aatatataaaacagcctaaaataatatgcatgtagagcataaatgttacaagtactttcagaaaagtagtaacagatatttattgcttataataagcaga 44147729  T
Q  113 aatcaacatttgcatcttaatattatttatttaagaagcttgctcatttgatatctccatgaatatatacaagtttaaaacatttatccataaatgaata 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  44147730 aatcaacatttgcatcttaatgttatttatttaagaagcttgctcatttgatatctccatgaatagatacaagtttaaaacatttttccataaatgaata 44147829  T
Q  213 atcataa-cttgttttaatcaacaaagtttaaatatatgcatgttgaattcagtggtgacaacaattgattaaggctaaaagtttattgaatataaagta 311  Q
    ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147830 atcataaacttgttttaatcaacaaactttaaatgtatgcatgttgaattcagtggtgacaacaattgattaaggctaaaagtttattgaatataaagta 44147929  T
Q  312 gtttaggtttgaaaacattcatctataagtgagttgaacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagtt 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44147930 gtttaggtttgaaaacattcatctaaaagtgagttgaacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagtt 44148029  T
Q  412 ataatcaattctagagactagatcaattctactcgagcactatgttataatcaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44148030 ataatcaattctagagactagatcaattctactcgagcactgtgttataatcaa 44148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 443
Target Start/End: Original strand, 40959680 - 40959758
Alignment:
Q  365 taaaaatcaattgcggagataaaagctctaaactctaacttcaagttataatcaattctagagactagatcaattctac 443  Q
    ||||||||||||   |||| |||||||| ||||| || | |||||||| ||| |||| ||||||||| |||||||||||    
T  40959680 taaaaatcaattatagagacaaaagctccaaactgtagcatcaagttagaattaattttagagactacatcaattctac 40959758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 419
Target Start/End: Original strand, 42423152 - 42423272
Alignment:
Q  298 ttgaatataaagtagtttaggtttgaaaacattcatctataagtgagttgaacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaac 397  Q
    ||||||||||||| ||||| | ||||| || ||||  || ||||| ||||| |||||||||||||  ||||| ||||||   |||| ||||||||||||     
T  42423152 ttgaatataaagtggtttatgattgaacacgttcacgtaaaagtgggttgaccaataaatttgaagctaaaattcaattttagagacaaaagctctaaat 42423251  T
Q  398 tctaacttcaagttataatcaa 419  Q
    |||| ||| ||| |||||||||    
T  42423252 tctagctt-aagctataatcaa 42423272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 8382046 - 8382008
Alignment:
Q  338 aagtgagttgaacaataaatttgaaagtaaaaatcaatt 376  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  8382046 aagtgagttgaacaataaacttgaatgtaaaaatcaatt 8382008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 2764434 - 2764509
Alignment:
Q  298 ttgaatataaagtagtttaggtttgaaaacattcatctataagtgagttgaacaataaatttgaaagtaaaaatca 373  Q
    |||||||||||||  ||||  |||| | |||||||  || ||||||||||||| ||||||| ||||||||||||||    
T  2764434 ttgaatataaagtgatttatatttggatacattcacgtaaaagtgagttgaaccataaattcgaaagtaaaaatca 2764509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 882791 - 882728
Alignment:
Q  313 tttaggtttgaaaacattcatctataagtgagttgaacaataaatttgaaagtaaaaatcaatt 376  Q
    |||| ||||| | ||||||||  | ||||||||| ||||||||||||||| |||||||||||||    
T  882791 tttatgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 34063172 - 34063139
Alignment:
Q  340 gtgagttgaacaataaatttgaaagtaaaaatca 373  Q
    ||||||||||||||||||||||| ||||||||||    
T  34063172 gtgagttgaacaataaatttgaatgtaaaaatca 34063139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 38123659 - 38123709
Alignment:
Q  326 acattcatctataagtgagttgaacaataaatttgaaagtaaaaatcaatt 376  Q
    |||||||| || ||||||||||| ||||||||||||  |||||||||||||    
T  38123659 acattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaatt 38123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 428
Target Start/End: Complemental strand, 10373495 - 10373466
Alignment:
Q  399 ctaacttcaagttataatcaattctagaga 428  Q
    ||||||||||||||||||||||||||||||    
T  10373495 ctaacttcaagttataatcaattctagaga 10373466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 427
Target Start/End: Complemental strand, 42858208 - 42858100
Alignment:
Q  318 gtttgaaaacattcatctataagtgagttgaacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagttataatc 417  Q
    ||||||| | |||||| || ||||||||||||| |||||||||   || ||||||||||   ||  ||||||||| |||  ||||||||||| || ||||    
T  42858208 gtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaag-taaaatc 42858110  T
Q  418 aattctagag 427  Q
    ||||||||||    
T  42858109 aattctagag 42858100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 10859853 - 10859929
Alignment:
Q  348 aacaataaatttgaaagtaaaaatcaattgcggagataaaagctctaaactctaacttcaagttataatcaattcta 424  Q
    ||||||||||||||   |||||||||| ||  |||  |||||||| ||| |||| |||||||||| |||||||||||    
T  10859853 aacaataaatttgaggttaaaaatcaaatgttgaggcaaaagctccaaattctagcttcaagttagaatcaattcta 10859929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 14299579 - 14299615
Alignment:
Q  338 aagtgagttgaacaataaatttgaaagtaaaaatcaa 374  Q
    |||||||||||||||| |||||||| |||||||||||    
T  14299579 aagtgagttgaacaattaatttgaaggtaaaaatcaa 14299615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 25319063 - 25319018
Alignment:
Q  403 cttcaagttataatcaattctagagactagatcaattctactcgag 448  Q
    |||||||||| |||||||||| ||||| | ||||||||||||||||    
T  25319063 cttcaagttagaatcaattctggagacaaaatcaattctactcgag 25319018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Complemental strand, 32100372 - 32100336
Alignment:
Q  338 aagtgagttgaacaataaatttgaaagtaaaaatcaa 374  Q
    ||||||||||||||||||||||||  |||||||||||    
T  32100372 aagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 7973 - 8029
Alignment:
Q  135 ttatttatttaagaagcttgctcatttgatatctccatgaatatatacaagtttaaa 191  Q
    |||||||||||| |||||  | |||||||||| || |||||||| ||||||||||||    
T  7973 ttatttatttaacaagctctcccatttgatatttcaatgaatatttacaagtttaaa 8029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University