View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_11 (Length: 479)
Name: NF3963_low_11
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 12273931 - 12273714
Alignment:
| Q |
17 |
aaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaagcaatcatttgacacctaccagctgaaga |
116 |
Q |
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| T |
12273931 |
aaacttgttaatatcataaaaatcaagcttatcaatacaacaatatcttgaagcatatcataaaaattcaagcaatcatttgacacctaccagctgaaga |
12273832 |
T |
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| Q |
117 |
gtcccacttgcatggccagaagcacctgaagctataatttgaacagttcttgctctagcaacaattgttggaaacaattccatccatttttgctataaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273831 |
gtcccacttgcatggccagaagcacctgaagctataatttgaacagttcttgctctagcaacaattgttggaaacaattccatccatttttgctataaaa |
12273732 |
T |
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| Q |
217 |
catacaaggtaaagaaag |
234 |
Q |
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|||||||||||||||||| |
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| T |
12273731 |
catacaaggtaaagaaag |
12273714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 314 - 469
Target Start/End: Complemental strand, 12273635 - 12273480
Alignment:
| Q |
314 |
ttacagcatcaagaaaagcatcaacaagagtgacactattcatgattacaacagcagaatcacgcgtagcttcattccttaactcattcctttgcttaag |
413 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273635 |
ttacagcatcaagaaaagcatcaacaagagtaacactattcatgattacaacagcagaatcacgcgtagcttcattccttaactcattcctttgcttaag |
12273536 |
T |
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| Q |
414 |
attcaaaggccattgaaaaaccctagcatgctcatcaaaattaagaacttccctat |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12273535 |
attcaaaggccattgaaaaaccctagcatgctcatcaaaattaagaacttctctat |
12273480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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