View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_12 (Length: 465)
Name: NF3963_low_12
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 2282451 - 2282905
Alignment:
| Q |
1 |
attacgaagagatttagcttcttgttcgagcttgttaattcgtgccatcaaatccgaagttttggacattgcatgttcctcattgttcttgagtttttca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2282451 |
attacgaagagatttagcttcttgttcgagcttgttaattcgtgccatcaaatccaaagttttggacattgcatgttcctcattgttcttgagtttttca |
2282550 |
T |
|
| Q |
101 |
tttaacgctgacactgctttttcaagttcagcattctttgcgcgtagctgtttcacctcatgtgcttcaaattcatttgtttctgtcgattttggagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2282551 |
tttaacgctgacactgctttttcaagttcagcattctttgcgcgtagctgtttcacctcatgtgcttcaaattcatttgtttctgtcgattttggagtct |
2282650 |
T |
|
| Q |
201 |
tgagagcttcaagagtattgacaaatgaagaataacgttccctttgtgataatcttttgttgaaatctgaatgatcaaattctgtgtcatcagaagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2282651 |
tgagagcttcaagagtattgacaaatgaagaataacgttccctttgtgataatcttttgttgaaatctgaatgatcaaattctgtgtcatcagaagaaaa |
2282750 |
T |
|
| Q |
301 |
gtatcctgtgtcatctgaactggaggaagagagggaagaaactctctttactctacgaggaggtgctttcatatactctctggtaagacgaccatacagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2282751 |
gtatcctgtgtcatctgaactggaggaagagagggaagaaactctctttactctacgaggaggtgctttcatatattctctggtaagacgaccatacagt |
2282850 |
T |
|
| Q |
401 |
gcatacagtgactggtactgattgtagaagtcctcaattagtctcacaggttctg |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2282851 |
gcatacagtgactggtactgattgtagaagtcctcaattagtctcacaagttctg |
2282905 |
T |
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