View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_16 (Length: 444)
Name: NF3963_low_16
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_16 |
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| [»] scaffold0133 (2 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 16782522 - 16782107
Alignment:
| Q |
18 |
tgtttatccagtttatatattaatattgaagttgtttggattcccacattaccggcattcttatgcatatatgtataaatgtgtttgagcactctcacct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782522 |
tgtttatccagtttatatattaatattgaagttgtttggattcccacattaccgacattcttatgcatatatgtataaatgtgtttgagcactctcacct |
16782423 |
T |
|
| Q |
118 |
tttattatgctagtttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagaggacaatttttctaggcactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16782422 |
tttattatgctagtttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagagaacaatttttctaggcactg |
16782323 |
T |
|
| Q |
218 |
agcaaatgaatggacatgatcttgnnnnnnncccactgtcatgtagttttcctcactgtcatgtactgatannnnnnnnnctatagcaaccaatattcac |
317 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16782322 |
agcaaatgaatggacatgatcttgtttttttcccactgtcatgtagttttcctcactgtcatgtactgatatttttttttctatagcaaccaatattcac |
16782223 |
T |
|
| Q |
318 |
aagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16782222 |
aagttgcagaaaaactacatccactgatttaatagataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatcta |
16782123 |
T |
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| Q |
418 |
aacaactttgattcat |
433 |
Q |
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|||||||||||||||| |
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| T |
16782122 |
aacaactttgattcat |
16782107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 16839760 - 16839645
Alignment:
| Q |
122 |
ttatgctag-tttttggaatgtgattctagtccgtttaacagttattatcaacaattaagccatacctttgaaagaggacaatttttctaggcactgagc |
220 |
Q |
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||||||||| ||||||||||| |||||| ||| ||||||| ||||| |||| |||| |||| ||||||||| ||| ||||| || ||| |||||||| |
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| T |
16839760 |
ttatgctagatttttggaatgagattcttctccatttaacaattattctcaataattgagccctacctttgacagacaacaatattcctaagcactgagt |
16839661 |
T |
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| Q |
221 |
aaatgaatggacatga |
236 |
Q |
| |
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|||| || |||||||| |
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| T |
16839660 |
aaataaacggacatga |
16839645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 298 - 433
Target Start/End: Complemental strand, 9644 - 9509
Alignment:
| Q |
298 |
ctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctaga |
397 |
Q |
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|||||||| ||||| || ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9644 |
ctatagcagccaattttgacatgttgcagaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctaga |
9545 |
T |
|
| Q |
398 |
gcaaagtcatctctaatctaaacaactttgattcat |
433 |
Q |
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||||| ||||||| |||| ||||||||||||||||| |
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| T |
9544 |
gcaaaatcatctccaatccaaacaactttgattcat |
9509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 325 - 433
Target Start/End: Complemental strand, 13965 - 13857
Alignment:
| Q |
325 |
agaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaacaact |
424 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| |
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| T |
13965 |
agaagaactacatccactgatttaatatataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaaatcatctccaatccaaacaact |
13866 |
T |
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| Q |
425 |
ttgattcat |
433 |
Q |
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||||||||| |
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| T |
13865 |
ttgattcat |
13857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 249 - 420
Target Start/End: Original strand, 38938331 - 38938502
Alignment:
| Q |
249 |
cccactgtcatgtagttttcctcactgtcatgtactgatannnnnnnnn-ctatagcaaccaatattcacaagttgcagaaaaactacatccactgattt |
347 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||| ||||||||||||| |||||||||||||||||| |
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| T |
38938331 |
cccacagtcatgtagttttcgtcactgtcatgtactgattttttttctctctacagcagccaatattgacaagttgcagaagaactacatccactgattt |
38938430 |
T |
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| Q |
348 |
aatacataatctttgaaaacaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaac |
420 |
Q |
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|||| | |||||||||||| ||||||| || ||||||||||||||||||||||||| |||||| |||| |||| |
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| T |
38938431 |
aatagacaatctttgaaaaaaaataactacacatatttcatcttcctagagcaaag-catctccaatccaaac |
38938502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 38938169 - 38938237
Alignment:
| Q |
20 |
tttatccagtttatatattaatattgaagtt-gtttggattcccacattaccggcattcttatgcatat |
87 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||| || |||| || ||||| |
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|
| T |
38938169 |
tttatccattttatatattaatattgaagttcgtttggattcccacattaccagcgttctcatacatat |
38938237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 172
Target Start/End: Original strand, 38938237 - 38938277
Alignment:
| Q |
133 |
tttggaatgtgattctagt-ccgtttaacagttattatcaa |
172 |
Q |
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||||||||||||||||||| |||||||||| |||||||||| |
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| T |
38938237 |
tttggaatgtgattctagtcccgtttaacaattattatcaa |
38938277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 393
Target Start/End: Complemental strand, 10264 - 10169
Alignment:
| Q |
298 |
ctatagcaaccaatattcacaagttgcagaaaaactacatccactgatttaatacataatctttgaaaacaaataacaactcatatttcatcttcc |
393 |
Q |
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|||||||| |||| || ||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10264 |
ctatagcagtcaattttgacatgttgcaaaagaactacatccactgatttaatatataatctttgaaaacaaataacaacgcatatttcatcttcc |
10169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 11983113 - 11983167
Alignment:
| Q |
366 |
acaaataacaactcatatttcatcttcctagagcaaagtcatctctaatctaaac |
420 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||||| |||| |||| |
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|
| T |
11983113 |
acaaataataacgcatatttcatcttcatagagcaaagtcatctccaatccaaac |
11983167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 11982816 - 11982865
Alignment:
| Q |
188 |
tttgaaagaggacaatttttctaggcactgagcaaatgaatggacatgat |
237 |
Q |
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|||||||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
11982816 |
tttgaaagagaacaatgtttctgctcactgagcaaatgaatggacatgat |
11982865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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