View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_19 (Length: 410)
Name: NF3963_low_19
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 121 - 316
Target Start/End: Original strand, 28180935 - 28181120
Alignment:
| Q |
121 |
tatcatattctacagaatctgcgcaataacaatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggca |
220 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
28180935 |
tatcatattctacagaatctgcgcgataacaatccctataaaaatcatctggaagagctatatctgacattgtcat-----ttcctttaaatcaaaggca |
28181029 |
T |
|
| Q |
221 |
ataataacaccaattttggtctcataattataaaccagccaatgaatagaatagaatagaaccattcaccggcaacctcaacatgatttcctttat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28181030 |
ataataacaccaattttggtctcataattataaaccagccaat-----gaatagaatagaaccattcaccggcaacctcaacatgatttcctttat |
28181120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 161 - 269
Target Start/End: Original strand, 30131048 - 30131151
Alignment:
| Q |
161 |
aaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagcc |
260 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||| | || | |||||||||||||||||||||| |
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| T |
30131048 |
aaaatcatttggaagagttatctctgacattgtcat-----ttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagcc |
30131142 |
T |
|
| Q |
261 |
aatgaatag |
269 |
Q |
| |
|
||||||||| |
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|
| T |
30131143 |
aatgaatag |
30131151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 30165785 - 30165682
Alignment:
| Q |
163 |
aatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaa |
262 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||| |
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| T |
30165785 |
aatcatttggaagagctatctctgccattgtcgcttc-----ctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaa |
30165691 |
T |
|
| Q |
263 |
tgaatagaa |
271 |
Q |
| |
|
||||||||| |
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|
| T |
30165690 |
tgaatagaa |
30165682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 30125090 - 30125197
Alignment:
| Q |
157 |
tataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaacc |
256 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||| | | |||||||||| ||||| |||| |
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| T |
30125090 |
tataaaaatcatttggaagagctatttctgacattgtcgcttc-----ctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaacc |
30125184 |
T |
|
| Q |
257 |
agccaatgaatag |
269 |
Q |
| |
|
||||||||||||| |
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|
| T |
30125185 |
agccaatgaatag |
30125197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 30124906 - 30124981
Alignment:
| Q |
3 |
tttgtaaaggatattggcaaaaagtccggagcaggatgcctagaaaaaacaagagtctgagtccaagatgaatcca |
78 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||| | ||||||| |
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|
| T |
30124906 |
tttgtaaaggatattggggaaaagtgcggagcaggatgcatagaaaaaacaagagttcgagtccaacaggaatcca |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 30120047 - 30120151
Alignment:
| Q |
160 |
aaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagc |
259 |
Q |
| |
|
||||||| | ||| |||||||||||||| |||| || ||||||||||||||||||||||||||||| || |||||||||| ||||| ||||| | |
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| T |
30120047 |
aaaaatcctttggcagagctatctctgatattg-----tcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacc |
30120141 |
T |
|
| Q |
260 |
caatgaatag |
269 |
Q |
| |
|
|||||||||| |
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|
| T |
30120142 |
caatgaatag |
30120151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 43164808 - 43164923
Alignment:
| Q |
151 |
aatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataatta |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |||||||||||||| | |||| |||||||||||| |
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| T |
43164808 |
aatcactataaaaatcatctggaagagcaatctctgacattg-----tcttttcctttaaatcataggcaataataacatctatttcagtctcataatta |
43164902 |
T |
|
| Q |
251 |
taaaccagccaatgaatagaa |
271 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
43164903 |
taaaccagccaatgaatagaa |
43164923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 271
Target Start/End: Original strand, 41311130 - 41311245
Alignment:
| Q |
151 |
aatccctataaaaatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataatta |
250 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||| | |||| |||| || || | |
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| T |
41311130 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcat-----ttcctttaaatcaaaggcaataataacatccatttcagtcttatcatca |
41311224 |
T |
|
| Q |
251 |
taaaccagccaatgaatagaa |
271 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
41311225 |
taaaccagccaatgaatagaa |
41311245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 21426706 - 21426605
Alignment:
| Q |
163 |
aatcatctggaagagctatctctgacattgtcatttcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaa |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| | ||||||||| |||||| |||||||||| |
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| T |
21426706 |
aatcatctggaagagctatctctgacattgttgtttc-----ctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaa |
21426612 |
T |
|
| Q |
263 |
tgaatag |
269 |
Q |
| |
|
||||||| |
|
|
| T |
21426611 |
tgaatag |
21426605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 21426015 - 21425959
Alignment:
| Q |
285 |
ttcaccggcaacctcaacatgatttcctttatcacctcttggggaagatacacgctc |
341 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||| || |||||||||||| |
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|
| T |
21426015 |
ttcaccggcaacctcagaaggatttcctttatcacttcttcaggcagatacacgctc |
21425959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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