View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_21 (Length: 406)
Name: NF3963_low_21
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 46301112 - 46300723
Alignment:
| Q |
1 |
tgtcaccggaacttccaccgcaaagaaatcgacggtgaattcactacccagcggtctcatcaccctcaacaccaccaccatcaattatcaccttactacc |
100 |
Q |
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| T |
46301112 |
tgtcaccggaacttccaccgcaaagaaatcgacggtgaattcactacccagcggtctcatcaccctcaacaccaccaccatcaattatcaccttactacc |
46301013 |
T |
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| Q |
101 |
accgtgcagctttacctcctccgcctggttttcaccaccactccgtaactccacctatatcacaacatcgtccattagctttgccacctgctgcatcgag |
200 |
Q |
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| T |
46301012 |
accgtgcagctttacctcctccgcctggttttcaccaccactccgtaactccacctatatcacaacatcgtccattagctttgccacctgctgcatcgag |
46300913 |
T |
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| Q |
201 |
taggggatacagtagagaagaagataacgtgtcaaatccaagcagcannnnnnnnnnnnnnnnnagtggaacgaagaaaaggtttagaacaaaattcacg |
300 |
Q |
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| T |
46300912 |
taggggatacagtagagaagaagataacgtgtcaaatccaagcagca---gtggtggtggtggtagtggaacgaagaaaaggtttagaacaaaattcacg |
46300816 |
T |
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| Q |
301 |
caggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaattctgtgct |
393 |
Q |
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| T |
46300815 |
caggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggtgcaattgaacaattctgtgct |
46300723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 3683690 - 3683597
Alignment:
| Q |
277 |
aaaaggtttagaacaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaag |
370 |
Q |
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| T |
3683690 |
aaaagattcagaacaaaattcacgcaggaacagaaggaaaagatgcatgaatttgctgataaagttgggtggaagatgcagaagagagatgaag |
3683597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 14021571 - 14021488
Alignment:
| Q |
289 |
acaaaattcacgcaggaacaaaaggataagatgcttgcatttgcggagaaaattgggtggagaattcagaaggaagatgaaggt |
372 |
Q |
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|||||||||||||||||||| |||||||||||| | | || || |||||| | || |||||||||||||| | ||||||||| |
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| T |
14021571 |
acaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaattgggttggagaattcagaaacatgatgaaggt |
14021488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27508226 - 27508264
Alignment:
| Q |
1 |
tgtcaccggaacttccaccgcaaagaaatcgacggtgaa |
39 |
Q |
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| T |
27508226 |
tgtcaccggaacttccaccgcaaagagatcgatggtgaa |
27508264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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