View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_22 (Length: 397)
Name: NF3963_low_22
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 8 - 381
Target Start/End: Original strand, 35568618 - 35568980
Alignment:
| Q |
8 |
cagcacagaagcacaattataacattaagatcaccctttggattcactaaagattaaaggaaaagaatcatggtttaactgaaaaccacaatttaatcta |
107 |
Q |
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| T |
35568618 |
cagcatagaagcacaattttaacattaagatcaccctttggattcactaaagattaaaggaaaagaatcatggtttaactgaaaaccacaatttaatcta |
35568717 |
T |
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| Q |
108 |
gcatgcatacttttaggtaaaatttccctagttttgtgaatattgacaattgcaggttggtcttctaatcacggttactagcaccttccccataaaacac |
207 |
Q |
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| T |
35568718 |
gcatgcatacttttaggtaaaatttccctagttttgtgaatattgacaattgcaggttggtcttctaatcacgg-----------ttccccataaaacac |
35568806 |
T |
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| Q |
208 |
aattaattaaacacccagttttgcaagaannnnnnnngtaaaggttcgtaaattttctttttatgcaaataagaaaaactaccaactttaaaagctcacc |
307 |
Q |
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| T |
35568807 |
aattaattaaacacccagttttgcaagaattttttttgtaaaggttcgtaaattttctttttatgcagataagaaaaactaccaactttaaaagctcacc |
35568906 |
T |
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| Q |
308 |
cagtttaataatccacccaaaggaataaactagaaattcaattgttaacatccctaattttcacctcaaaaatc |
381 |
Q |
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| T |
35568907 |
cagtttaataatccacccaaaggaataaactagaaattcaattgttaacatccctaattttcacctcaaaaatc |
35568980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 45206145 - 45206204
Alignment:
| Q |
100 |
ttaatctagcatgcatacttttaggtaaaatttccctag-ttttgtgaatattgacaatt |
158 |
Q |
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| T |
45206145 |
ttaatctagcatgcatactcctaggtgaaatttctctagattttgtgattattgacaatt |
45206204 |
T |
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