View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_23 (Length: 394)
Name: NF3963_low_23
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 8245532 - 8245903
Alignment:
| Q |
16 |
gtgtccatagaagagtttctcattagtgagtgtgtacctgtcaatnnnnnnnn-gaaagaaaatgtgtagctatcacttttcctaatttcatattgattt |
114 |
Q |
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| T |
8245532 |
gtgtccatagaagagtttctcattagtg--tgtgtagctgtcaataaaaaaaaagaaagaaaatgtgtagctatcacttttcctaatttcatattgattt |
8245629 |
T |
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| Q |
115 |
catttatcttttaaaaatatcttagtgtttttgtggaaagaaaaatttaatgcttttctcaattgattgaagatttaacctttgnnnnnnnnnnnnnttc |
214 |
Q |
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| T |
8245630 |
catttatcttttaaaaatatcttagtgtttttgtggaaagaaaaatttaatgcttttctcaattgattgaagatttaacctttgaaaaaaaaatattttc |
8245729 |
T |
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| Q |
215 |
aacttgtagggtatgaagttggagacagaggatgttgtggcactggcacacttgaagttacttatttatgcaaccatttgcaacccacttgtcccaacga |
314 |
Q |
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| T |
8245730 |
aacttgtagggtatgaagttggagacagaggatgttgtggcactggcacactagaagttacttatttatgcaaccatttgcaacccacttgtcccaacga |
8245829 |
T |
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| Q |
315 |
tttggattatgtgttttgggacagttttcaccctactgaatctgtttacagaaaacttgttgcccctatgctac |
388 |
Q |
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| T |
8245830 |
tttggattatgtgttttgggacagttttcaccctactgaatctgtttacagaaaacttgttgcccctattctac |
8245903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 379
Target Start/End: Original strand, 8255297 - 8255408
Alignment:
| Q |
268 |
gaagttacttatttatgcaaccatttgcaacccacttgtcccaacgatttggattatgtgttttgggacagttttcaccctactgaatctgtttacagaa |
367 |
Q |
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| T |
8255297 |
gaagttatttttttatgcaaccatttggaacccacttgtgtcaacgactcggattatgtgttttgggatgcttttcatcctactgaagccgtttacaaaa |
8255396 |
T |
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| Q |
368 |
aacttgttgccc |
379 |
Q |
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| T |
8255397 |
tacttgttgccc |
8255408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 31243551 - 31243634
Alignment:
| Q |
242 |
gaggatgttgtggcactggcacacttgaagttacttatttatgcaaccatttgcaacccacttgtcccaacgatttggattatg |
325 |
Q |
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| T |
31243551 |
gagggtgttgtggcacatgcaaaattgaagttatttttttatgcaaccatttggaacccacttgtgccaacgattcggactatg |
31243634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Original strand, 8262680 - 8262726
Alignment:
| Q |
308 |
ccaacgatttggattatgtgttttgggacagttttcaccctactgaa |
354 |
Q |
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| T |
8262680 |
ccaatgattcggaatatgtgttttgggacagttttcaccccactgaa |
8262726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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