View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_low_28 (Length: 324)

Name: NF3963_low_28
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_low_28
NF3963_low_28
[»] chr5 (20 HSPs)
chr5 (178-306)||(3714795-3714924)
chr5 (15-141)||(25175059-25175185)
chr5 (15-141)||(25115967-25116095)
chr5 (15-141)||(18433225-18433350)
chr5 (14-90)||(5779632-5779708)
chr5 (14-94)||(9665735-9665815)
chr5 (34-141)||(22428953-22429058)
chr5 (27-141)||(34577085-34577198)
chr5 (14-89)||(12441084-12441159)
chr5 (15-135)||(26020659-26020780)
chr5 (28-141)||(41382912-41383022)
chr5 (14-94)||(9869623-9869705)
chr5 (14-90)||(23011150-23011227)
chr5 (17-138)||(5187735-5187861)
chr5 (71-141)||(18433035-18433105)
chr5 (71-141)||(26020470-26020540)
chr5 (107-141)||(22429196-22429230)
chr5 (108-138)||(23011383-23011413)
chr5 (104-141)||(33324835-33324872)
chr5 (109-141)||(31569926-31569958)
[»] chr3 (22 HSPs)
chr3 (15-141)||(20968738-20968864)
chr3 (15-141)||(10293817-10293943)
chr3 (14-94)||(47870887-47870967)
chr3 (15-94)||(3644599-3644678)
chr3 (13-94)||(26540775-26540856)
chr3 (15-141)||(18875099-18875225)
chr3 (28-94)||(13657513-13657579)
chr3 (29-141)||(17372318-17372429)
chr3 (14-94)||(45060662-45060742)
chr3 (15-90)||(9026942-9027017)
chr3 (23-89)||(1100983-1101049)
chr3 (18-94)||(42627457-42627534)
chr3 (16-138)||(14015717-14015839)
chr3 (14-90)||(17440970-17441046)
chr3 (71-141)||(10293628-10293698)
chr3 (18-94)||(4947470-4947545)
chr3 (106-141)||(47871121-47871156)
chr3 (108-141)||(4947279-4947312)
chr3 (107-140)||(9026756-9026789)
chr3 (107-140)||(14015964-14015997)
chr3 (110-139)||(17441066-17441095)
chr3 (108-141)||(18874902-18874935)
[»] chr1 (13 HSPs)
chr1 (15-138)||(17518325-17518448)
chr1 (15-141)||(8108741-8108866)
chr1 (15-141)||(47955516-47955642)
chr1 (15-141)||(41083118-41083245)
chr1 (18-141)||(31848105-31848226)
chr1 (27-133)||(22149429-22149534)
chr1 (29-93)||(1176934-1176998)
chr1 (15-94)||(46057102-46057182)
chr1 (71-141)||(47955326-47955396)
chr1 (104-141)||(13589656-13589693)
chr1 (68-141)||(1176856-1176930)
chr1 (104-141)||(17518599-17518636)
chr1 (109-141)||(22149701-22149733)
[»] scaffold0110 (2 HSPs)
scaffold0110 (15-141)||(45556-45682)
scaffold0110 (71-141)||(45771-45841)
[»] chr6 (21 HSPs)
chr6 (15-141)||(18241874-18242000)
chr6 (15-140)||(11656690-11656815)
chr6 (27-141)||(33972013-33972126)
chr6 (14-141)||(21032186-21032314)
chr6 (14-90)||(31598043-31598119)
chr6 (14-90)||(31598527-31598603)
chr6 (27-141)||(10039695-10039808)
chr6 (15-92)||(3403757-3403834)
chr6 (28-93)||(33658661-33658726)
chr6 (18-141)||(23250611-23250734)
chr6 (34-141)||(30388081-30388187)
chr6 (15-70)||(2762696-2762751)
chr6 (71-141)||(3403953-3404023)
chr6 (71-141)||(18242120-18242190)
chr6 (71-141)||(21031998-21032068)
chr6 (104-141)||(12714451-12714488)
chr6 (105-141)||(30388360-30388396)
chr6 (107-141)||(3403737-3403771)
chr6 (111-141)||(31598732-31598762)
chr6 (104-141)||(3825546-3825583)
chr6 (104-141)||(13579648-13579685)
[»] chr8 (31 HSPs)
chr8 (14-141)||(15155903-15156030)
chr8 (13-141)||(9465780-9465908)
chr8 (15-138)||(12281334-12281457)
chr8 (15-141)||(34313783-34313908)
chr8 (14-141)||(18019996-18020122)
chr8 (15-141)||(37752325-37752450)
chr8 (23-128)||(765951-766054)
chr8 (13-141)||(43162253-43162383)
chr8 (15-141)||(16929151-16929276)
chr8 (14-141)||(7127672-7127796)
chr8 (15-138)||(41662130-41662247)
chr8 (14-94)||(22787020-22787099)
chr8 (24-138)||(33748006-33748120)
chr8 (15-93)||(37670021-37670099)
chr8 (37-141)||(43246105-43246210)
chr8 (28-93)||(74751-74816)
chr8 (17-90)||(23123411-23123484)
chr8 (13-138)||(9930744-9930870)
chr8 (14-93)||(3463707-3463786)
chr8 (29-93)||(11007750-11007814)
chr8 (71-141)||(43245891-43245961)
chr8 (15-90)||(43598658-43598735)
chr8 (71-141)||(765754-765824)
chr8 (71-141)||(15156149-15156219)
chr8 (71-141)||(41662367-41662437)
chr8 (104-141)||(16928962-16928999)
chr8 (104-139)||(74981-75016)
chr8 (107-141)||(22851410-22851444)
chr8 (104-138)||(23123514-23123548)
chr8 (104-141)||(43162536-43162573)
chr8 (108-141)||(43598756-43598789)
[»] chr7 (25 HSPs)
chr7 (15-138)||(9412046-9412169)
chr7 (14-141)||(3687374-3687502)
chr7 (14-141)||(29291826-29291953)
chr7 (14-135)||(5349489-5349607)
chr7 (15-141)||(27096250-27096376)
chr7 (15-141)||(27181927-27182053)
chr7 (14-141)||(23686626-23686751)
chr7 (14-94)||(15567056-15567136)
chr7 (27-141)||(6908232-6908346)
chr7 (15-90)||(13772683-13772758)
chr7 (16-88)||(35080023-35080094)
chr7 (14-94)||(38191468-38191548)
chr7 (27-89)||(18925128-18925190)
chr7 (15-92)||(33628596-33628674)
chr7 (14-80)||(34235759-34235825)
chr7 (31-93)||(5735471-5735533)
chr7 (71-141)||(9412289-9412359)
chr7 (107-141)||(5349733-5349767)
chr7 (23-64)||(8953817-8953858)
chr7 (104-141)||(8953886-8953923)
chr7 (107-138)||(35080223-35080254)
chr7 (71-141)||(3687621-3687690)
chr7 (104-141)||(13772898-13772935)
chr7 (106-139)||(34235977-34236010)
chr7 (108-141)||(38191566-38191599)
[»] chr4 (23 HSPs)
chr4 (15-141)||(13198814-13198940)
chr4 (14-141)||(3930198-3930325)
chr4 (15-138)||(11241412-11241534)
chr4 (15-141)||(35393685-35393810)
chr4 (15-141)||(39415244-39415371)
chr4 (15-141)||(27304736-27304862)
chr4 (15-141)||(49178724-49178850)
chr4 (15-138)||(16555538-16555661)
chr4 (28-94)||(3844404-3844470)
chr4 (15-92)||(5206028-5206105)
chr4 (14-94)||(22681788-22681868)
chr4 (27-138)||(8488403-8488513)
chr4 (29-94)||(8182092-8182157)
chr4 (14-89)||(7603186-7603261)
chr4 (15-94)||(54508881-54508964)
chr4 (38-92)||(24775742-24775797)
chr4 (71-141)||(3930444-3930514)
chr4 (104-141)||(22681594-22681631)
chr4 (107-138)||(8488211-8488242)
chr4 (192-263)||(41754530-41754600)
chr4 (72-141)||(18077167-18077236)
chr4 (104-141)||(7603163-7603200)
chr4 (107-140)||(24775783-24775816)
[»] chr2 (22 HSPs)
chr2 (15-141)||(30191133-30191259)
chr2 (15-138)||(32672865-32672988)
chr2 (14-139)||(20347185-20347309)
chr2 (15-141)||(6171175-6171301)
chr2 (15-141)||(11883834-11883960)
chr2 (15-138)||(17345943-17346066)
chr2 (15-140)||(40469448-40469573)
chr2 (34-140)||(26737501-26737606)
chr2 (28-94)||(15321610-15321676)
chr2 (48-140)||(15920799-15920890)
chr2 (29-93)||(43495375-43495439)
chr2 (28-92)||(18055265-18055330)
chr2 (13-89)||(40221382-40221459)
chr2 (31-141)||(6495646-6495755)
chr2 (71-141)||(40469693-40469763)
chr2 (71-141)||(24832351-24832421)
chr2 (71-141)||(30190943-30191013)
chr2 (104-141)||(11883643-11883680)
chr2 (71-141)||(15321410-15321480)
chr2 (71-141)||(20347428-20347498)
chr2 (71-141)||(32673107-32673177)
chr2 (107-140)||(7591850-7591883)
[»] scaffold0802 (2 HSPs)
scaffold0802 (15-141)||(1138-1264)
scaffold0802 (71-141)||(1384-1454)
[»] scaffold1221 (1 HSPs)
scaffold1221 (18-141)||(1694-1818)
[»] scaffold0598 (1 HSPs)
scaffold0598 (14-93)||(6672-6751)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-141)||(205706-205831)
[»] scaffold0001 (3 HSPs)
scaffold0001 (15-141)||(183383-183509)
scaffold0001 (27-138)||(439121-439230)
scaffold0001 (72-141)||(438950-439019)
[»] scaffold0319 (2 HSPs)
scaffold0319 (27-141)||(6414-6529)
scaffold0319 (71-141)||(6661-6731)
[»] scaffold0015 (2 HSPs)
scaffold0015 (15-141)||(17063-17190)
scaffold0015 (104-141)||(16871-16908)
[»] scaffold0192 (2 HSPs)
scaffold0192 (15-94)||(25134-25213)
scaffold0192 (71-141)||(25333-25403)
[»] scaffold0433 (1 HSPs)
scaffold0433 (28-94)||(10690-10756)
[»] scaffold0376 (2 HSPs)
scaffold0376 (18-92)||(7494-7568)
scaffold0376 (104-141)||(7597-7634)
[»] scaffold0002 (1 HSPs)
scaffold0002 (104-141)||(411942-411979)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 3714924 - 3714795
Alignment:
Q  178 gataaagtgataacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacacc-tttggagaacttatttcccacattcactagcag 276  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3714924 gataaagtgacaacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacaccttttggagaacttatttcccacattcactagcag 3714825  T
Q  277 tcataatgaatgtatactgtttgatccgat 306  Q
    ||||||||||||||||||||||||||||||    
T  3714824 tcataatgaatgtatactgtttgatccgat 3714795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 25175059 - 25175185
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  25175059 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 25175158  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  25175159 aaatcgcacaattaacaaaagataggg 25175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 25115967 - 25116095
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnnga--gggggtg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||  |||||||    
T  25115967 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagaaggggggtg 25116066  T
Q  113 caaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||    
T  25116067 caaaatcgcacaattaacaaaagataggg 25116095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 18433225 - 18433350
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||         |||||||||||    
T  18433225 atctttagccccttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctc-aaaaaaaagagggggtgca 18433323  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  18433324 aaatcgcacaattaacaaaagataggg 18433350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 5779708 - 5779632
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  5779708 catcttttgccccttttcccctcttttaatgatgattttgaacaaaacacaattgtcaaaagatgaggtgcaaaatc 5779632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 9665735 - 9665815
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9665735 catcttttgccctttttcccctcttttaatattgattttgaacaaaacacaatttgcaaaagatggggtgcaaaatcgctc 9665815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 22429058 - 22428953
Alignment:
Q  34 ctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaa 133  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||         || |||||||||||||||||||||| ||||    
T  22429058 ctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaattgctc--aaaaaaagatggggtgcaaaatcgcacaattagcaaa 22428961  T
Q  134 agataggg 141  Q
    ||||||||    
T  22428960 agataggg 22428953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 34577085 - 34577198
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||         || ||||||||||||| ||||||    
T  34577085 ttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctc-aaaaaaaagatggggtgcaaaatcacacaat 34577183  T
Q  127 taacaaaagataggg 141  Q
    || ||||||||||||    
T  34577184 tagcaaaagataggg 34577198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 12441159 - 12441084
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaat 89  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  12441159 catcttttgccggttttcccctcttttaatgatgattttgaacaaaacacaattgacaaaagatgaggtgcaaaat 12441084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 26020659 - 26020780
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtgc 113  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||          ||| ||||||    
T  26020659 atctttagccccttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatgagttgcaaaatcgctcaaaaaaaaaagagagggtgc 26020758  T
Q  114 aaaatcgcacaattaacaaaag 135  Q
    ||||||||||||||||||||||    
T  26020759 aaaatcgcacaattaacaaaag 26020780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 41383022 - 41382912
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaatt 127  Q
    |||||||||||| |||||| ||||||||||||| ||| ||||||||||||| | ||||||||||||          ||| ||||||||||||||||||||    
T  41383022 tttcccctcttt-aatgattattttgaacaaaaaacatttggcaaaagatgagatgcaaaatcgct--aaaaaaaagagagggtgcaaaatcgcacaatt 41382926  T
Q  128 aacaaaagataggg 141  Q
    ||||||||||||||    
T  41382925 aacaaaagataggg 41382912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 9869705 - 9869623
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggc--aaaagatggggtgcaaaatcgctc 94  Q
    |||| |||||||  ||||||||||||||| ||||||||||||||||||||| |||||  |||| | |||||||||||||||||    
T  9869705 catcatttgccccctttcccctcttttaacgatgattttgaacaaaacacaattggccaaaaaaaaggggtgcaaaatcgctc 9869623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 23011227 - 23011150
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggc-aaaagatggggtgcaaaatc 90  Q
    |||||||||||   ||||||||||||||||||||||||||| ||||||||| ||| | |||| |||||||||||||||    
T  23011227 catcttttgccatctttcccctcttttaatgatgattttgagcaaaacacatttgacaaaaaaatggggtgcaaaatc 23011150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 5187735 - 5187861
Alignment:
Q  17 cttttgcccattttcccctctttta---atgatgattttgaacaaaacacagttggcaaaagatgggg---tgcaaaatcgctcnnnnnnnnngaggggg 110  Q
    |||||| |||||||||| |||||||   ||||||||||||| ||||||||| ||||| ||||||||||   |||||||||||||          ||||||    
T  5187735 cttttgtccattttcccatcttttaatgatgatgattttgaccaaaacacaattggc-aaagatggggtgatgcaaaatcgctcaaaaaaaaataggggg 5187833  T
Q  111 tgcaaaatcgcacaattaacaaaagata 138  Q
    |||||||| |||||||||||||||||||    
T  5187834 tgcaaaattgcacaattaacaaaagata 5187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 18433105 - 18433035
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         || |||||||||||||||||||||| ||||||||||||    
T  18433105 aaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggg 18433035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 26020540 - 26020470
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||| |||||||||||||||         || |||||||||||||||||||||| ||||||||||||    
T  26020540 aaaagatgcggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggg 26020470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 22429196 - 22429230
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||| ||||||||||||    
T  22429196 ggggtgcaaaatcgcacaattagcaaaagataggg 22429230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 138
Target Start/End: Original strand, 23011383 - 23011413
Alignment:
Q  108 gggtgcaaaatcgcacaattaacaaaagata 138  Q
    |||||||||||||||||||||||||||||||    
T  23011383 gggtgcaaaatcgcacaattaacaaaagata 23011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 33324835 - 33324872
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  33324835 gagggggtgcaaaatcacacaattgacaaaagataggg 33324872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 31569958 - 31569926
Alignment:
Q  109 ggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||| |||||||||||||    
T  31569958 ggtgcaaaatcgcacaattgacaaaagataggg 31569926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 20968864 - 20968738
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  20968864 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 20968765  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  20968764 aaatcgcacaattaacaaaagataggg 20968738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 10293817 - 10293943
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  10293817 atcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaacaaaagagggggtgca 10293916  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  10293917 aaatcgcacaattaacaaaagataggg 10293943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 47870967 - 47870887
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  47870967 catcttttgcccattttccccacttttaatgatgatttcgaacaaaacacaattggcaaaagatggggtgcaaaatcgctc 47870887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 3644678 - 3644599
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  3644678 atcttttgcccattttcccctcttttaatgatgatttcgaacaaaacacaattggcaaaagatgaggtgcaaaatcgctc 3644599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 26540775 - 26540856
Alignment:
Q  13 tcatcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26540775 tcatcttttgcctcatttcccctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctc 26540856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 18875099 - 18875225
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| ||||||||||  || ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||         |||||||||||    
T  18875099 atctttagcccattttcttctattttaatgatgattttgaataaaacacaattgccaaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgca 18875198  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||| ||||||| ||||||||||||    
T  18875199 aaatcgtacaattagcaaaagataggg 18875225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 13657579 - 13657513
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13657579 tttcccctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctc 13657513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 17372429 - 17372318
Alignment:
Q  29 ttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaatta 128  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  17372429 ttcccctcttttaatgatgattttgaacaaaatacaattggcaaaagatggggtgcaaaatcgctcaaaaaaaac-agggggtgcaaaatcgcacaatta 17372331  T
Q  129 acaaaagataggg 141  Q
     ||||| ||||||    
T  17372330 gcaaaaaataggg 17372318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 45060742 - 45060662
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||    
T  45060742 catcttttgcccactttcccctattttaatgatgattttgaacaaaacacaattgacaaaaaatagggtgcaaaatcgctc 45060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 9026942 - 9027017
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    |||||| |||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  9026942 atctttagccccttttcctctcttttaatgatgatttttaacaaaacacaattggcaaaagatggggtgcaaaatc 9027017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 1101049 - 1100983
Alignment:
Q  23 cccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaat 89  Q
    |||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||    
T  1101049 cccattttcccctcttttaatgataattttgaacaaaatacaattgacaaaagatggggtgcaaaat 1100983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 42627457 - 42627534
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||| || |||||||||||||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||||||    
T  42627457 ttttgtcccttttcccctcttttaatgatgattttgaacaaaaaaacaattggcaaaaaatggggtgcaaaatcgctc 42627534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 14015839 - 14015717
Alignment:
Q  16 tcttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||| |||         |||| ||||||    
T  14015839 tcttttgccctctttcccctcttttaatgatgattttgaacaaaaacacaatttgcaaaagat-gggtgcaaaatcactcaaaaaaagagaggaggtgca 14015741  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||| ||| ||||||||||    
T  14015740 aaatcgcacgattgacaaaagata 14015717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 17440970 - 17441046
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    |||||||||||   ||| |||||||||||||||||||||||||| |||||| ||| ||| | |||||||||||||||    
T  17440970 catcttttgccgccttttccctcttttaatgatgattttgaacataacacaattgacaacatatggggtgcaaaatc 17441046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 10293698 - 10293628
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||| |||||||||||||    
T  10293698 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggg 10293628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 4947470 - 4947545
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||  |||||||| |||  |||| |||||||||||||||||| ||||||||||||   ||||||||||||||    
T  4947470 ttttgccctctttcccctatttctatgacgattttgaacaaaacacaattggcaaaagat-atgtgcaaaatcgctc 4947545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 47871121 - 47871156
Alignment:
Q  106 gggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47871121 gggggtgcaaaatcgcacaattagcaaaagataggg 47871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 4947312 - 4947279
Alignment:
Q  108 gggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||||| ||||||    
T  4947312 gggtgcaaaatcgcacaattaacaaaaaataggg 4947279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 9026789 - 9026756
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagatagg 140  Q
    |||||||||||| |||||||||||||||||||||    
T  9026789 ggggtgcaaaattgcacaattaacaaaagatagg 9026756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 14015964 - 14015997
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagatagg 140  Q
    |||||||||||||||||||||| |||||||||||    
T  14015964 ggggtgcaaaatcgcacaattagcaaaagatagg 14015997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 17441066 - 17441095
Alignment:
Q  110 gtgcaaaatcgcacaattaacaaaagatag 139  Q
    ||||||||||||||||||||||||||||||    
T  17441066 gtgcaaaatcgcacaattaacaaaagatag 17441095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 18874935 - 18874902
Alignment:
Q  108 gggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  18874935 gggtgcaaaatcgcacaattagcaaaagataggg 18874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 17518448 - 17518325
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  17518448 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 17518349  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  17518348 aaatcgcacaattaacaaaagata 17518325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 8108866 - 8108741
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          ||||||||||    
T  8108866 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaa-agggggtgca 8108768  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  8108767 aaatcgcacaattaacaaaagataggg 8108741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 47955516 - 47955642
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  47955516 atcttttgccctttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 47955615  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| |||||||||||    
T  47955616 aaatcgcacaattaataaaagataggg 47955642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 41083118 - 41083245
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct-cnnnnnnnnngagggggtgc 113  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||           ||||||||||    
T  41083118 atcttttgccccttttcctctcttttaatgatgattttgaacaaaacacagttggcaaaatattgggtgcaaaatcgctaaaaaaaaaaagagggggtgc 41083217  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||| |||||||||||||||    
T  41083218 aaaatcgcacaactaacaaaagataggg 41083245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 31848105 - 31848226
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaa 117  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||         ||||||||||||||    
T  31848105 ttttgccccatttctcctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctc--gaaaaaagagggggtgcaaaa 31848202  T
Q  118 tcgcacaattaacaaaagataggg 141  Q
    ||| ||||||||||||||||||||    
T  31848203 tcgtacaattaacaaaagataggg 31848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 22149534 - 22149429
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||         |||||||||||||||||||||||    
T  22149534 ttttcctctcttttaatgatgattttgaacaaagcacaattgacaaaagatggggtgcaaaatcgctc-aaaaaaaagagggggtgcaaaatcgcacaat 22149436  T
Q  127 taacaaa 133  Q
    || ||||    
T  22149435 taccaaa 22149429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1176934 - 1176998
Alignment:
Q  29 ttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  1176934 ttcccctcttttaataatgattttgaacaaaacacaattgacaaaagatggggtgcgaaatcgct 1176998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 46057102 - 46057182
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||  ||||| |||| |||||    
T  46057102 atcttttgccccctttcccctcttttaatgatgattttgaactaaaacacaattggcaaaagaaagggtgtaaaaccgctc 46057182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 47955396 - 47955326
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  47955396 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 47955326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 13589656 - 13589693
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13589656 gagggggtgcaaaatcgcacaattagcaaaagataggg 13589693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 1176930 - 1176856
Alignment:
Q  68 ggcaaaagatggggtgcaaaatcgct-cnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||| |         ||||||||||||||| |||||||| |||||||||||||    
T  1176930 ggcaaaagatggggtgcaaaatcgctacaaaaaaaaagagggggtgcaaaattgcacaattgacaaaagataggg 1176856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 17518599 - 17518636
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  17518599 gagggggtgcaaaatcgcacaattggcaaaagataggg 17518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 22149701 - 22149733
Alignment:
Q  109 ggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||| ||||||||||||    
T  22149701 ggtgcaaaatcgcacaattagcaaaagataggg 22149733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 45682 - 45556
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||| |||||    
T  45682 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggagtgca 45583  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  45582 aaatcgcacaattaacaaaagataggg 45556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 45771 - 45841
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  45771 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 45841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 18242000 - 18241874
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  18242000 atcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaacaaaagagggggtgca 18241901  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  18241900 aaatcgcacaattaacaaaagataggg 18241874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 11656690 - 11656815
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| |||| ||| || |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||    
T  11656690 atctttagcccctttacctctcttttattgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctcaaaaataaagagggggtgca 11656789  T
Q  115 aaatcgcacaattaacaaaagatagg 140  Q
    |||||||||||||| |||||||||||    
T  11656790 aaatcgcacaattagcaaaagatagg 11656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 33972126 - 33972013
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||         ||||||||||||||||| |||||    
T  33972126 ttttcctctcttttaatgatgattttgaacaaaacacaattggcaaaagatagggtgcaaaatcgctc-aaaaataagagggggtgcaaaatcgtacaat 33972028  T
Q  127 taacaaaagataggg 141  Q
    |||||||||||||||    
T  33972027 taacaaaagataggg 33972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 21032186 - 21032314
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtg 112  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||          |||| || |    
T  21032186 catcttttaccccctttcccctcttttaatgatgattttgaacaaaacacaattggtaaaagatggggtgcaaaatcgctcaaagaaaaaagaggaggcg 21032285  T
Q  113 caaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||    
T  21032286 caaaatcgcacaattaacaaaagataggg 21032314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 31598119 - 31598043
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31598119 catcttttgtccctttccccctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatc 31598043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 31598603 - 31598527
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  31598603 catcttttgtccctttccccctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatc 31598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 10039808 - 10039695
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||| |||||||||||||||||||||||||||||||||  || |||||||||||||| ||||||||||         || ||||||||||||||||||||    
T  10039808 ttttgccctcttttaatgatgattttgaacaaaacacaactgacaaaagatggggtgtaaaatcgctcataaaaaaaga-ggggtgcaaaatcgcacaat 10039710  T
Q  127 taacaaaagataggg 141  Q
    || ||||||||||||    
T  10039709 tagcaaaagataggg 10039695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 3403834 - 3403757
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgc 92  Q
    |||||| |||| |||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  3403834 atctttagccccttttcctctattttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgc 3403757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 33658661 - 33658726
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  33658661 tttcccctcttttaatgatgattttgaacaaaacacaattgacaaaagacggggtgcaaaatcgct 33658726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 23250734 - 23250611
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaa 116  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||         ||||||||||||     
T  23250734 ttttgccccctttcccctcttttaatgatgattttgaacaaaaacacaattggcaaaagatagggcgcaaaatcgctc-aaaaaaaagagggggtgcaag 23250636  T
Q  117 atcgcacaattaacaaaagataggg 141  Q
    ||| ||||||| |||||||||||||    
T  23250635 atctcacaattgacaaaagataggg 23250611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 141
Target Start/End: Complemental strand, 30388187 - 30388081
Alignment:
Q  34 ctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaa 133  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||         ||| || |||||||||||||||||| ||||    
T  30388187 ctcttttattgatgattttgaacaaaacataattgacaaaagatggggtgcaaaatcgctc-aaaaaaaagagaggctgcaaaatcgcacaattagcaaa 30388089  T
Q  134 agataggg 141  Q
    ||||||||    
T  30388088 agataggg 30388081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 2762696 - 2762751
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggc 70  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||    
T  2762696 atcttttgctcattttccccttttttaatgatgattttgaataaaacacaattggc 2762751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 3403953 - 3404023
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  3403953 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 3404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 18242120 - 18242190
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  18242120 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 18242190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 21032068 - 21031998
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| |||||| |||||    
T  21032068 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagttaggg 21031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 12714488 - 12714451
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12714488 gaggggctgcaaaatcgcacaattaacaaaagataggg 12714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 30388360 - 30388396
Alignment:
Q  105 agggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30388360 agggggtgcaaaatcgcacaattagcaaaagataggg 30388396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 3403771 - 3403737
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||| ||||||||||||    
T  3403771 ggggtgcaaaatcgcacaattagcaaaagataggg 3403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 31598732 - 31598762
Alignment:
Q  111 tgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||||    
T  31598732 tgcaaaatcgcacaattaacaaaagataggg 31598762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 3825583 - 3825546
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  3825583 gagggggtgcaaaatcgcacaattagcaaaatataggg 3825546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 13579648 - 13579685
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13579648 gagggggtgcaaaatcgcacaattagcaaacgataggg 13579685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 15156030 - 15155903
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||    
T  15156030 catcttttgccccttttcccctcttttagtgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgc 15155931  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||||||    
T  15155930 aaaatcgcacaattaacaaaagataggg 15155903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 9465780 - 9465908
Alignment:
Q  13 tcatcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtg 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||         |||||||||    
T  9465780 tcatcttttgccccttttcccctcttttaatgatgattttgaacaaaacacaattggcaaaaaatggggtgcaaaattgctcaaaaaaaaagagggggtg 9465879  T
Q  113 caaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||    
T  9465880 caaaatcgcacaattaacaaaagataggg 9465908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 12281334 - 12281457
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||         |||||||||||    
T  12281334 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttgacaaaagatagggtggaaaatcgctcaaaaaaaaagagggggtgca 12281433  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  12281434 aaatcgcacaattaacaaaagata 12281457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 34313908 - 34313783
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||         |||||||||||    
T  34313908 atcttttgccccttttcccctcttttaatgataattttgaacaaaacacagtttgcaaaagatagggtgcaaaatcgctc-aaaaaaaagagggggtgca 34313810  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  34313809 aaatcgcacaattaacaaaagataggg 34313783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 18019996 - 18020122
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||         ||||||||||    
T  18019996 catcttttgccccttttcccttcttttaatgacgattttgaacaaaacgcagttgccaaaagatggggtgcaaaatcgctc-aaaaaaaagagggggtgc 18020094  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||||||    
T  18020095 aaaatcgcacaattaacaaaagataggg 18020122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 37752325 - 37752450
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||         |||||||||||    
T  37752325 atctttagccccttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaatatggggtgcaaaatcgctc-aaaaaaaagagggggtgca 37752423  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  37752424 aaatcgcacaattaacaaaagataggg 37752450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 765951 - 766054
Alignment:
Q  23 cccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||    
T  765951 cccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctc--aaaaaaagagggggtgcaaaatcgca 766048  T
Q  123 caatta 128  Q
    ||||||    
T  766049 caatta 766054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 43162383 - 43162253
Alignment:
Q  13 tcatcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc--nnnnnnnnngaggggg 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||           |||| ||    
T  43162383 tcatcttttgccccttttcccctcttttaatgatgattttgaacaaaacacaattgacaaaagatagggtgcaaaatcgctcaaaaaaaaaaagaggagg 43162284  T
Q  111 tgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||| ||||||    
T  43162283 tgcaaaatcgcacaattaacaaaatataggg 43162253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 16929151 - 16929276
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||         |||||||||||    
T  16929151 atctttagtccattttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgttc-aaaaaaaagagggggtgca 16929249  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||| ||||||||||||    
T  16929250 aaatcgcacaattagcaaaagataggg 16929276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 7127796 - 7127672
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||||||||||           ||||| |||    
T  7127796 catcttttgcccattttcccctcttttaatgatgatttttaacaaaacacaattgacaaaagatgaggtgcaaaatcgct---aagaaaaaaggggatgc 7127700  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||    
T  7127699 aaaatcgcacaattagcaaaagataggg 7127672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 41662247 - 41662130
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||      |||||||||||||||||||||||  ||||||||||||||          |||||||||||    
T  41662247 atcttttgccccttttcccctcttttaatgatga------acaaaacacagttggcaaaagatatggtgcaaaatcgcttaaaaaaaaagagggggtgca 41662154  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  41662153 aaatcgcacaattaacaaaagata 41662130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 22787020 - 22787099
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  22787020 catcttttgccccttt-cccctcttttaatgatgattttgaacaaaacacaattggaaaaagatgaggtgcaaaatcgctc 22787099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 33748120 - 33748006
Alignment:
Q  24 ccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcac 123  Q
    ||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||         ||| || ||||||||| |||    
T  33748120 ccattttcctctcttttagtgatgattttgaacaaaacacaattggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagcggatgcaaaatcacac 33748021  T
Q  124 aattaacaaaagata 138  Q
    ||||| |||||||||    
T  33748020 aattagcaaaagata 33748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 37670099 - 37670021
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    |||||||||||  ||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37670099 atcttttgccccattttctctcttttaataatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgct 37670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 43246105 - 43246210
Alignment:
Q  37 ttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtgcaaaatcgcacaattaacaaaag 135  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||          |||||||||||||||| |||||||| ||||||    
T  43246105 ttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctcaaaaaaaaaagagggggtgcaaaatcacacaattagcaaaag 43246204  T
Q  136 ataggg 141  Q
    ||||||    
T  43246205 ataggg 43246210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 74816 - 74751
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  74816 tttcccctcttttaatgatgattttgaacaaaacacaattagcaaaagatgaggtgcaaaatcgct 74751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 23123484 - 23123411
Alignment:
Q  17 cttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  23123484 cttttgccccttttcccctcttttaatgatgattttgaacaaaaacacaattggcaaaagat-gggtgcaaaatc 23123411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 9930744 - 9930870
Alignment:
Q  13 tcatcttttgcccattttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaa-atcgctcnnnnnnnnngaggggg 110  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||| ||||||           |||| |    
T  9930744 tcatcttttgccccctttcccctcttttaatgatgattttgaacaaaaacacaattgacaaaatatggggtgcaaacatcgct-aaaaaaaaacagggag 9930842  T
Q  111 tgcaaaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||||||    
T  9930843 tgcaaaatcgcacaattaacaaaagata 9930870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 3463786 - 3463707
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    ||||||||||||  || || ||||||||||||||||||| |||||||| || ||||||||||||| |||| |||||||||    
T  3463786 catcttttgcccccttacctctcttttaatgatgattttaaacaaaactcaattggcaaaagatgaggtgtaaaatcgct 3463707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 11007750 - 11007814
Alignment:
Q  29 ttcccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||    
T  11007750 ttcccctcttttaatgatgattttgaacaaaaacacaattggcaaaaaat-gggtgcaaaatcgct 11007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 43245961 - 43245891
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  43245961 aaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattatcaaaagataggg 43245891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 43598658 - 43598735
Alignment:
Q  15 atcttttgcccattttcccctctttta---atgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    ||||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||| ||||| ||| |||||||||||    
T  43598658 atcttttgccccttt-cccctcttttatcgatgatgattttgaacaaaacacaattgacaaaaaatgtggtgcaaaatc 43598735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 765824 - 765754
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  765824 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 765754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 15156149 - 15156219
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||          |||||||||||||||||||||||| |||||||||||||    
T  15156149 aaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattgacaaaagataggg 15156219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 41662367 - 41662437
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  41662367 aaaagatggggtgcaaaatcgctcaataaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 41662437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 16928999 - 16928962
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16928999 gagggggtgcaaaatcgcacaattagcaaaagataggg 16928962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 74981 - 75016
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagatag 139  Q
    ||||||||||||||||||||||||| ||||||||||    
T  74981 gagggggtgcaaaatcgcacaattagcaaaagatag 75016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 22851444 - 22851410
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||| |||||||||||||    
T  22851444 ggggtgcaaaatcgcacaattgacaaaagataggg 22851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 23123514 - 23123548
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||| |||||||||    
T  23123514 gagggggtgcaaaatcgcacaattagcaaaagata 23123548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 43162536 - 43162573
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  43162536 gagggggtgcaaaatcgcacgattgacaaaagataggg 43162573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 43598756 - 43598789
Alignment:
Q  108 gggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||| ||||||||||||    
T  43598756 gggtgcaaaatcgcacaattagcaaaagataggg 43598789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 9412169 - 9412046
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||         |||||||||||    
T  9412169 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtggaaaatcgctcaaaaaaaaagagggggtgca 9412070  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  9412069 aaatcgcacaattaacaaaagata 9412046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 3687502 - 3687374
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||          |||||||||    
T  3687502 catcttttgccctttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaaagagggggtg 3687403  T
Q  113 caaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||    
T  3687402 caaaatcgcacaattaacaaaagataggg 3687374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 29291953 - 29291826
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||         ||||||||||    
T  29291953 catcttttgccctctttcccctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgtaaaatcgctctaaaaaaaagagggggtgc 29291854  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||| ||||| ||||||||||||    
T  29291853 aaaatcgcataattatcaaaagataggg 29291826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 5349607 - 5349489
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||          |||||||||    
T  5349607 catcttttgcccatttccccctcttttaatgatgattttgaacaaaacacggttgacaaaagatggggtgcaaaatcgctcaaaaaaa---agggggtgc 5349511  T
Q  114 aaaatcgcacaattaacaaaag 135  Q
    ||||||||||||||||||||||    
T  5349510 aaaatcgcacaattaacaaaag 5349489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 27096250 - 27096376
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||         |||||| ||||    
T  27096250 atcttttgccccccttcccctcttttaatgatgattttgaacaaaacacaattggcaaaatatggggtgcaaaatcgctcaaaaaagaagaggggatgca 27096349  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    ||||| ||||||| |||||||||||||    
T  27096350 aaatcacacaattgacaaaagataggg 27096376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 27182053 - 27181927
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||         |||||| ||||    
T  27182053 atcttttgccccccttcccctcttttaatgatgattttgaacaaaacacaattggcaaaatatggggtgcaaaatcgctcaaaaaagaagaggggatgca 27181954  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    ||||| ||||||| |||||||||||||    
T  27181953 aaatcacacaattgacaaaagataggg 27181927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 23686626 - 23686751
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||  |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         ||||||   |    
T  23686626 catctttcacccaattccccctcttttaatgatgattttgaacaaaacacatttggcaaaagatggggtgcaaaatcgctccaaaaaaaagagggg--tc 23686723  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||    
T  23686724 aaaatcgcacaattagcaaaagataggg 23686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 15567136 - 15567056
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  15567136 catcttttgcccctttttccctcttttaatgctgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctc 15567056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 6908346 - 6908232
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||           |  |||||||||||||||||||    
T  6908346 ttttcctctcttttaatgatgattttgaacaaaacacaattggcaaaagatagagtgcaaaatcgctaaaaaaaaaaaaaagggtgcaaaatcgcacaat 6908247  T
Q  127 taacaaaagataggg 141  Q
    |||||| ||||||||    
T  6908246 taacaatagataggg 6908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 13772758 - 13772683
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatc 90  Q
    |||||| |||| |||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  13772758 atctttagccccttttcctctattttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatc 13772683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 35080094 - 35080023
Alignment:
Q  16 tcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaa 88  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||    
T  35080094 tcttttgccccttttcacctcttttaatgatgattttgaac-aaacacaattgtcaaaagatggggtgcaaaa 35080023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 38191468 - 38191548
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||| ||| ||||| || || |||||||||||||    
T  38191468 catcttttgccccttaccccctcttttaatgatgattttgaacaaaacacaattgacaaaaaataggatgcaaaatcgctc 38191548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 18925190 - 18925128
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaat 89  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||    
T  18925190 tttttccctcttttaatgatgattttgaacaaaacacaattgacaaaatatggggtgcaaaat 18925128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 33628596 - 33628674
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttg-aacaaaacacagttggcaaaagatggggtgcaaaatcgc 92  Q
    |||||| |||| |||||| |||||||||||||||||||  ||||||| ||| |||||||||||||||||||||||||||    
T  33628596 atctttagccccttttcctctcttttaatgatgattttttaacaaaaaacaattggcaaaagatggggtgcaaaatcgc 33628674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 34235825 - 34235759
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggg 80  Q
    ||||||||||||   |||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  34235825 catcttttgcccccattcccctcttttaaagatgattttgaacaaaacacaattggcaaaagatggg 34235759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 5735471 - 5735533
Alignment:
Q  31 cccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    |||||||||||||||||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  5735471 cccctcttttaatgatgattttgaacaaaatacaattggcaagatatgaggtgcaaaatcgct 5735533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 9412289 - 9412359
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  9412289 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 9412359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 5349733 - 5349767
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||||||||||    
T  5349733 ggggtgcaaaatcgcacaattaacaaaagataggg 5349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 8953817 - 8953858
Alignment:
Q  23 cccattttcccctcttttaatgatgattttgaacaaaacaca 64  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  8953817 cccattttcccttattttaatgatgattttgaacaaaacaca 8953858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 8953886 - 8953923
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8953886 gagggggtgcaaaattgcacaattaacaaaagataggg 8953923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 138
Target Start/End: Original strand, 35080223 - 35080254
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||||||||||    
T  35080223 ggggtgcaaaatcgcacaattaacaaaagata 35080254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 3687621 - 3687690
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  3687621 aaaagatggggtgcaaaatcgctcaaaaaaaa-gagggggtgcaaaatcgcacaattggcaaaagataggg 3687690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 13772898 - 13772935
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13772898 gagggggtgcaaaatcgcacaattagcaaatgataggg 13772935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 34235977 - 34236010
Alignment:
Q  106 gggggtgcaaaatcgcacaattaacaaaagatag 139  Q
    ||||||||||||||||||||||| ||||||||||    
T  34235977 gggggtgcaaaatcgcacaattagcaaaagatag 34236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 38191566 - 38191599
Alignment:
Q  108 gggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||||||||    
T  38191566 gggtgcaaaatcgcataattaacaaaagataggg 38191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 13198814 - 13198940
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||         |||||||||||    
T  13198814 atcttttgcccattttcccctcttttaatgatgactttgaacaaaacacggttggcaaaagatagggtgcaaaatcgctcaaaacaaaagagggggtgca 13198913  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  13198914 aaatcgcacaattaacaaaagataggg 13198940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 3930325 - 3930198
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||    
T  3930325 catcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgc 3930226  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||| |||||| |||||||||||    
T  3930225 aaaatcgcataattaataaaagataggg 3930198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 11241534 - 11241412
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||| ||||    
T  11241534 atcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctc-aaaaaaaagaggggatgca 11241436  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  11241435 aaatcgcacaattaacaaaagata 11241412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 35393685 - 35393810
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||         |||||||||||    
T  35393685 atcttttgcccattttcccctcttttaatgatgattttgagcaaaacacaattgacaaaagatggggtgcaaaatcgctc-ataaaaaagagggggtgca 35393783  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    || ||||||||||| ||||||||||||    
T  35393784 aattcgcacaattagcaaaagataggg 35393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 39415371 - 39415244
Alignment:
Q  15 atcttttgccca-ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||         ||| ||||||    
T  39415371 atcttttgcccccttttcccctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctcaaataaaaagagagggtgc 39415272  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||    
T  39415271 aaaatcgcacaattagcaaaagataggg 39415244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 27304862 - 27304736
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||         |||||||||||    
T  27304862 atctttagcccattttcctctcttttaatgatgattttgaacaaaacacaattggcaaaatatgggttgcaaaatcgctcaaaagaaaagagggggtgca 27304763  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||| || |||||||||    
T  27304762 aaatcgcacaattagcagaagataggg 27304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 49178724 - 49178850
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct-cnnnnnnnnngagggggtgc 113  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |         ||||||||||    
T  49178724 atcttttgccccttt-cccctcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctccaaaaaaaaagagggggtgc 49178822  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||  ||||||||||||    
T  49178823 aaaatcgcacaattggcaaaagataggg 49178850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 16555661 - 16555538
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtgc 113  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||          ||||||||||    
T  16555661 atctttagccctttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagat-gggtgcaaaatcgctcaaaaaaaaaagagggggtgc 16555563  T
Q  114 aaaatcgcacaattaacaaaagata 138  Q
    |||||||||||||||||||||||||    
T  16555562 aaaatcgcacaattaacaaaagata 16555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 3844404 - 3844470
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3844404 tttcccatcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctc 3844470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 5206105 - 5206028
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgc 92  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||    
T  5206105 atctttagcccattttcctctcttttaatgatgattttgaacaaaataaaattggcaaaagatggggtgcaaaatcgc 5206028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 22681788 - 22681868
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||  |||||||||| ||||    
T  22681788 catcttttgccccttttcccctcttttaatgatgattttgaacaaaacatagttgacaaaagatatggtgcaaaattgctc 22681868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 8488403 - 8488513
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||         |||||||||||||||||||||||    
T  8488403 ttttcctctcttttaatgatgattttgaacaaaatacaattgacaaaagatggggtgcaaaatcgctc-aaaaaaaagagggggtgcaaaatcgcacaat 8488501  T
Q  127 taacaaaagata 138  Q
    ||  ||||||||    
T  8488502 tagaaaaagata 8488513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 8182092 - 8182157
Alignment:
Q  29 ttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  8182092 ttcccctcttttaatgatgattttgaacaaaacacaattggtaaaagatgggatgcaaaatcgctc 8182157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 7603261 - 7603186
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaat 89  Q
    ||||||||| ||  |||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  7603261 catcttttgtcccatttcccctattttaatgatgattttgaacaaaacacaattgacaaaagagggggtgcaaaat 7603186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 54508964 - 54508881
Alignment:
Q  15 atcttttgcccattttcccctcttttaatga---tgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||| ||||||||| |||||||||   ||||||||||| |||||||| || ||||||||| ||||||||||||||||    
T  54508964 atcttttgccccttttcccctattttaatgatgatgattttgaacaaaaacacaatttgcaaaagatagggtgcaaaatcgctc 54508881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 24775742 - 24775797
Alignment:
Q  38 tttaatgatgattttgaacaaaa-cacagttggcaaaagatggggtgcaaaatcgc 92  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||    
T  24775742 tttaatgatgattttgaacaaaaacacaattgacaaaagatggggtgcaaaatcgc 24775797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 3930444 - 3930514
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||||||||    
T  3930444 aaaagatggggtgcaaaatcgctaaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 3930514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 22681631 - 22681594
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22681631 gagggggtgcaaaatcgcacaattgacaaaagataggg 22681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 138
Target Start/End: Complemental strand, 8488242 - 8488211
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||||||||||    
T  8488242 ggggtgcaaaatcgcacaattaacaaaagata 8488211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 41754530 - 41754600
Alignment:
Q  192 aagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacacctttggagaacttatttccca 263  Q
    |||||||| |||||||||||||| |||||||| ||||| ||  || |||||||||||||| || ||||||||    
T  41754530 aagaaggatgaagatgggtttctttatgttacttacagtgg-ggagaacacctttggagatctgatttccca 41754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 18077167 - 18077236
Alignment:
Q  72 aaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||| |||||||||||||         ||||||||||||||||||||||||| ||||| ||||||    
T  18077167 aaagatgggatgcaaaatcgctcaacaaaaaagagggggtgcaaaatcgcacaattagcaaaaaataggg 18077236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 7603200 - 7603163
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  7603200 gagggggtgcaaaattgcacaattaaaaaaagataggg 7603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 24775783 - 24775816
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagatagg 140  Q
    ||||||||||||||||||||| ||||||||||||    
T  24775783 ggggtgcaaaatcgcacaattgacaaaagatagg 24775816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 30191133 - 30191259
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||    
T  30191133 atcttttgccctttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 30191232  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| |||||||||||    
T  30191233 aaatcgcacaattaataaaagataggg 30191259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 32672988 - 32672865
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||| |||||||    
T  32672988 atcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagagggtgca 32672889  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    ||||||||||||||||||||||||    
T  32672888 aaatcgcacaattaacaaaagata 32672865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 20347309 - 20347185
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||         || |||||||    
T  20347309 catcttttgccccatttcccctcttttaacgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaaaaaaga-ggggtgc 20347211  T
Q  114 aaaatcgcacaattaacaaaagatag 139  Q
    ||||||||||||||||||||||||||    
T  20347210 aaaatcgcacaattaacaaaagatag 20347185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 6171301 - 6171175
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||          |   ||||||    
T  6171301 atcttttgccccttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcactcaaaaaaaaaaaaaaggtgca 6171202  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  6171201 aaatcgcacaattaacaaaagataggg 6171175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 11883834 - 11883960
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||         |||||||||||    
T  11883834 atctttagccccttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggagtgcaaaatcgctcaaaaaaaaagagggggtgca 11883933  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||| ||||||||||||    
T  11883934 aaatcgcacaattagcaaaagataggg 11883960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 17345943 - 17346066
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||         |||| ||||||    
T  17345943 atctttagcccattttcctctcttttaatgatgattttgaacaaaacacaattggcaaaatatgggatgcaaaatcgctcaaaaataaagaggaggtgca 17346042  T
Q  115 aaatcgcacaattaacaaaagata 138  Q
    |||||||||||||| |||||||||    
T  17346043 aaatcgcacaattagcaaaagata 17346066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 40469573 - 40469448
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||| |||| |||||| || |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||         |||||||||||    
T  40469573 atctttagccccttttcctctattttaatgatgattttgaacaaaacacaattgacaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 40469474  T
Q  115 aaatcgcacaattaacaaaagatagg 140  Q
    |||||||||||||| |||||||||||    
T  40469473 aaatcgcacaattagcaaaagatagg 40469448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 26737606 - 26737501
Alignment:
Q  34 ctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaa 133  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |          ||||||||||||||||||||||||| ||||    
T  26737606 ctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcg-ttaaaaaaaaagagggggtgcaaaatcgcacaattagcaaa 26737508  T
Q  134 agatagg 140  Q
    |||||||    
T  26737507 agatagg 26737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 15321610 - 15321676
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  15321610 tttcccctcttttaatgatgattttgaacaaaacacaattgataaaagatggggtgcaaaatcgctc 15321676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 15920890 - 15920799
Alignment:
Q  48 attttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagatagg 140  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||         |||||||||||||||||||||||||||||||||||||    
T  15920890 attttgaacaaaacacaattggcaaaagatggggtgcaaaattgctc-aaaaaaaagagggggtgcaaaatcgcacaattaacaaaagatagg 15920799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 43495439 - 43495375
Alignment:
Q  29 ttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  43495439 ttcccctcttttaatgatgattttgaacaaaacacaattggcaaaatatgaggtgcaaaatcgct 43495375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 18055265 - 18055330
Alignment:
Q  28 tttcccctcttttaatgatgattttgaaca-aaacacagttggcaaaagatggggtgcaaaatcgc 92  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  18055265 tttcccctcttttaatgatgattttgaagacaaacacaattggcaaaagatggggtgcaaaatcgc 18055330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 40221459 - 40221382
Alignment:
Q  13 tcatcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagat-ggggtgcaaaat 89  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||    
T  40221459 tcatcttttgcccctttccccctcttttaatgatgattttgaacgaaacacaattgacaaaagatgggggtgcaaaat 40221382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 6495646 - 6495755
Alignment:
Q  31 cccctcttttaatgatgattttgaac-aaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaa 129  Q
    |||||| ||||||||||||||||||| ||||| || |||||||||||||  ||||||||||||||          ||| ||||||||||||||||||| |    
T  6495646 cccctcatttaatgatgattttgaacaaaaacgcaattggcaaaagatgacgtgcaaaatcgctcaaaaaaaa--aggaggtgcaaaatcgcacaattca 6495743  T
Q  130 caaaagataggg 141  Q
    ||||||||||||    
T  6495744 caaaagataggg 6495755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 40469693 - 40469763
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  40469693 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 40469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 24832421 - 24832351
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         || |||||||||||||||||||||| ||||||||||||    
T  24832421 aaaagatggggtgcaaaatcgctcaaaaaaaaagatggggtgcaaaatcgcacaattagcaaaagataggg 24832351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 30191013 - 30190943
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  30191013 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 30190943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 11883680 - 11883643
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11883680 gagggggtgcaaaatcgcacaattagcaaaagataggg 11883643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 15321480 - 15321410
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||          ||||| |||||||| ||||||||||||||||||||||    
T  15321480 aaaagatggggtgcaaaatcgctcaaaataaaataggggatgcaaaattgcacaattaacaaaagataggg 15321410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 20347428 - 20347498
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||| |||         ||||||||||||||||||||||||  ||||||||||||    
T  20347428 aaaagatggggtgcaaaatccctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 20347498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 32673107 - 32673177
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||          |||||||||||||||||||||||  ||||||||||||    
T  32673107 aaaagatggggtgcaaaatcgctcaaaaaaaaatagggggtgcaaaatcgcacaattggcaaaagataggg 32673177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 140
Target Start/End: Original strand, 7591850 - 7591883
Alignment:
Q  107 ggggtgcaaaatcgcacaattaacaaaagatagg 140  Q
    ||||||||||||||||||||| ||||||||||||    
T  7591850 ggggtgcaaaatcgcacaattgacaaaagatagg 7591883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 1264 - 1138
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||         |||||||||||    
T  1264 atcttttgcccttttccccctcttttaatgatgattttgaacaaaacacaattggcaaaagatagggtgcaaaatcgctcaaaaaaaaagagggggtgca 1165  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||||||    
T  1164 aaatcgcacaattaacaaaagataggg 1138  T

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Target: scaffold0802; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 1384 - 1454
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||  ||||||||||||    
T  1384 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattggcaaaagataggg 1454  T

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Target: scaffold1221 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 1694 - 1818
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtgcaaa 116  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||          |||| ||||||||    
T  1694 ttttgccccatttcccctcttttaatgatgattttaaacaaaacacagttggcaaaagatagggtgcaaaatcgctcaaaaagaaaagaggaggtgcaaa 1793  T
Q  117 atcgcacaattaacaaaagataggg 141  Q
    |||||||||| ||||||||||||||    
T  1794 atcgcacaataaacaaaagataggg 1818  T

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Target: scaffold0598 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 6751 - 6672
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct 93  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6751 catctcttgcccctttccccctcttttaatgatgattttgaacaaaacacagttggcaaaagatagggtgcaaaatcgct 6672  T

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Target: scaffold0009 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 205831 - 205706
Alignment:
Q  14 catcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgc 113  Q
    ||||||||||||  ||||||||||||| || |||||||||||||||||||| ||||||||||||| |||||||||||| ||         ||||||||||    
T  205831 catcttttgccccatttcccctcttttgattatgattttgaacaaaacacaattggcaaaagatgaggtgcaaaatcgttc--aaaaaaagagggggtgc 205734  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||| ||||||||||||    
T  205733 aaaatcgcacaattagcaaaagataggg 205706  T

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Target: scaffold0001 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 183509 - 183383
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgca 114  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||         ||| |||||||    
T  183509 atcttttgccccccttcccctcttttaatgatgattttgaacaaaacacaattggcaaaatatgaggtgcaaaatcgctcaaaaaagaagagagggtgca 183410  T
Q  115 aaatcgcacaattaacaaaagataggg 141  Q
    |||||| |||||| |||||||||||||    
T  183409 aaatcgtacaattgacaaaagataggg 183383  T

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Target: scaffold0001; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 439121 - 439230
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaat 126  Q
    |||||| |||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||         |||||| ||||||||||||||||    
T  439121 ttttcctctcttttaatgatgattttgaagaaaacacaattgacaaaagatggggtgcaaaatcgctc--aaaaaaagaggggatgcaaaatcgcacaat 439218  T
Q  127 taacaaaagata 138  Q
    || |||||||||    
T  439219 tagcaaaagata 439230  T

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Target: scaffold0001; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 439019 - 438950
Alignment:
Q  72 aaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  439019 aaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 438950  T

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Target: scaffold0319 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 6529 - 6414
Alignment:
Q  27 ttttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgct-cnnnnnnnnngagggggtgcaaaatcgcacaa 125  Q
    |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||           ||||||||||||||||||||||    
T  6529 ttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctaaaaaaaaaaagagggggtgcaaaatcgcacaa 6430  T
Q  126 ttaacaaaagataggg 141  Q
    ||| ||||||||||||    
T  6429 ttagcaaaagataggg 6414  T

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Target: scaffold0319; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 6661 - 6731
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  6661 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 6731  T

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Target: scaffold0015 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 17063 - 17190
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc-nnnnnnnnngagggggtgc 113  Q
    |||||| |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||          |||| |||||    
T  17063 atctttagccccttttcctctcttttaaggatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctcaaaaaaaaaagaggcggtgc 17162  T
Q  114 aaaatcgcacaattaacaaaagataggg 141  Q
    ||||| ||||||||| ||||||||||||    
T  17163 aaaattgcacaattagcaaaagataggg 17190  T

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Target: scaffold0015; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 16908 - 16871
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  16908 gagggggtgcataatcgcacaattagcaaaagataggg 16871  T

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Target: scaffold0192 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 25213 - 25134
Alignment:
Q  15 atcttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  25213 atctttagccccttttcctctcttttaatgatgattttgaacaaaacacaattgacaaaagatggggtgcaaaatcgctc 25134  T

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Target: scaffold0192; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 25333 - 25403
Alignment:
Q  71 aaaagatggggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||    
T  25333 aaaagatggggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagataggg 25403  T

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Target: scaffold0433 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 10756 - 10690
Alignment:
Q  28 tttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgctc 94  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10756 tttcccatcttttaatgatgattttgaacaaaacacaattggcaaaagatggggtgcaaaatcgctc 10690  T

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Target: scaffold0376 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 7568 - 7494
Alignment:
Q  18 ttttgcccattttcccctcttttaatgatgattttgaacaaaacacagttggcaaaagatggggtgcaaaatcgc 92  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  7568 ttttgccccatttctcctcttttaatgatgattttgaacaaaacacaattggcaaacgatggggtgcaaaatcgc 7494  T

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Target: scaffold0376; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 7597 - 7634
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  7597 gagggggtacaaaatcgcacaattagcaaaagataggg 7634  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 411979 - 411942
Alignment:
Q  104 gagggggtgcaaaatcgcacaattaacaaaagataggg 141  Q
    |||||||||||||||||||||||| |||||||||||||    
T  411979 gagggggtgcaaaatcgcacaattgacaaaagataggg 411942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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