View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_29 (Length: 322)
Name: NF3963_low_29
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 34338094 - 34338410
Alignment:
| Q |
1 |
cctcagcatgtcctcttctgatctgcaaaattgttgagatagacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338094 |
cctcagcatgtcctcttctgatctgcaaaattgttgagatagacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacat |
34338193 |
T |
|
| Q |
101 |
ttcctagtttaacgaataacaggctataaacggtgtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338194 |
ttcctagtttaacgaataacaggctataaaaggtgtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgta |
34338293 |
T |
|
| Q |
201 |
gtccatactaagctatcggaatgtatgtatataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338294 |
gtccatactaagctatcggaatgtatgtatataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaag |
34338393 |
T |
|
| Q |
301 |
aaggtccctatgctact |
317 |
Q |
| |
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|||||||| |||||||| |
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| T |
34338394 |
aaggtcccaatgctact |
34338410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 9072854 - 9072923
Alignment:
| Q |
229 |
atataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaa |
298 |
Q |
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|||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
9072854 |
atataacttacattcaaacaaatttgaggaagtcttccacccatatatataactgccattgcccaaccaa |
9072923 |
T |
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