View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_3 (Length: 630)
Name: NF3963_low_3
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 15 - 617
Target Start/End: Original strand, 49734941 - 49735543
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734941 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
49735040 |
T |
|
| Q |
115 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagaactttttgctttactagctcctacagccatgaatccagattgagctattgcg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735041 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagagctttttgctttactagctcctacagccatgaatccagattgagctattgcg |
49735140 |
T |
|
| Q |
215 |
acggctgccattgtgagagagaaaaacacctgaaaattaggaaattaaatgcttgatgctagaacaatgtgatgaattcaactcttataaatccttgttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735141 |
acggctgccattgtgagagagaaaaacacctgaaaattaggaaattaaatgcttgatgctagaacaatgtgatgaattcaactcttataaatccttgttg |
49735240 |
T |
|
| Q |
315 |
ctttgtatatatattttttgaaaaacatattaatctgttttagaattagcttatgctttgtaagtaacaattgacataagtaaaaaacttaaatttggac |
414 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735241 |
ctttgtatatattttttttgaaaaacatattaatctgttttagaattagcttatgctttgtaagtaacaattgacataagtaaaaaacttaaatttggac |
49735340 |
T |
|
| Q |
415 |
aattctgaactttgtcctctatatgtgacatagcatccaagtttggacaataacttacttgaaaaacatctgatattgaggttttgccattcttaacaag |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735341 |
aattctgaactttgtcctctatatgtgacatagcatccaagtttggacaataacttacttgaaaaacatctgatattgaggttttgccattcttaacaag |
49735440 |
T |
|
| Q |
515 |
ttgtgctccagcataaaaactgcatgcataaacacagaacataaagaagattgataagccaaaaccaactccactaactataccctgcctttttcctgtc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735441 |
ttgtgctccagcataaaaactgcatgcataaacacagaacataaagaagattgataagccaaaaccaactccactaactataccctgcctttttcctgtc |
49735540 |
T |
|
| Q |
615 |
tgt |
617 |
Q |
| |
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||| |
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| T |
49735541 |
tgt |
49735543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 15 - 289
Target Start/End: Complemental strand, 51215044 - 51214774
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||||| | |
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| T |
51215044 |
atatatgaacatcaggtctggttggatacttgaaagtgacatgatggaactcaatctctcccttcacatcttccagtatcattcctgattcatcactggt |
51214945 |
T |
|
| Q |
115 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagaactttttgctttactagctcctacagccatgaatccagattgagctattgcg |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| | |||||||| ||||||||||||||| ||||||||| || ||||||| || |||| |
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| T |
51214944 |
atctatttttgatttctgatcaagaatagcaaatactgaagcagctgaacttttggctttactagctcctggagccatgaagccggattgagataatgcg |
51214845 |
T |
|
| Q |
215 |
acggctgccattgtgagagagaaaaacacctgaaaattaggaaattaaatgcttgatgctagaacaatgtgatga |
289 |
Q |
| |
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|| |||||| |||||||||||||||| ||||||||| ||||||||||| || |||||| || |||||||||| |
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| T |
51214844 |
acagctgccgttgtgagagagaaaaatacctgaaaa----gaaattaaatgtttaatgctaaaagaatgtgatga |
51214774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 51148506 - 51148350
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||||||| | ||||| | ||||||||||||||||| || ||||||| |||||| || ||||| |||||||| |
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| T |
51148506 |
atatttgaacatcaagtctagtaggatacttgaaactaacatggttaaactcaatatctcccttgacttcttccagtgtcatgccagattcatcactaga |
51148407 |
T |
|
| Q |
115 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagaactttttgc |
171 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||| |||||| ||| ||||||||| |
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| T |
51148406 |
gtctatttgtgacttctgatcaagaatagcaaatatggaagcagcagcactttttgc |
51148350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 465 - 616
Target Start/End: Complemental strand, 51214718 - 51214567
Alignment:
| Q |
465 |
taacttacttgaaaaacatctgatattgaggttttgccattcttaacaagttgtgctccagcataaaaactgcatgcataaacacagaacataaagaaga |
564 |
Q |
| |
|
||||||||||||||||| |||| || || ||||||||||||| || |||||| || ||||||||||||||| |||||| ||||| |||| |||||||| |
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| T |
51214718 |
taacttacttgaaaaactcctgacatcgaagttttgccattctcaataagttgggcgccagcataaaaactgattgcatagacacaaaacagaaagaaga |
51214619 |
T |
|
| Q |
565 |
ttgataagccaaaaccaactccactaactataccctgcctttttcctgtctg |
616 |
Q |
| |
|
||| ||| ||||||||| |||||| |||| ||||||||||||||||||||| |
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| T |
51214618 |
ttgctaacccaaaaccagttccactgactaaaccctgcctttttcctgtctg |
51214567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 29934624 - 29934780
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||| | ||||| | |||||||| |||||||| || ||||||| |||||| || ||||| |||||||| |
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| T |
29934624 |
atatttgaacatcaggtctagtaggatacttgaaactaacatggttaaactcaatttctcccttgacttcttccagtgtcatcccagattcatcactaga |
29934723 |
T |
|
| Q |
115 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagaactttttgc |
171 |
Q |
| |
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||||||| ||| | |||||||||||| |||||||| |||||| || ||||||||| |
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| T |
29934724 |
atctatttgtgacttctgatcaagaattgcaaatattgaagcagtagcactttttgc |
29934780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 51159398 - 51159242
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||| | ||||| | |||||||| |||||||| || ||||||| |||||| || ||||| |||| || |
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|
| T |
51159398 |
atatttgaacatcgggtctagtgggatacttgaaactaacatggttaaactcaatttctcccttgacttcttccagtgtcatgccagattcatcaccagg |
51159299 |
T |
|
| Q |
115 |
gtctatttttgattcctgatcaagaatagcaaatatagaagcaacagaactttttgc |
171 |
Q |
| |
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|||||||| ||| | ||||||||||||||||||||| |||||| || ||||||||| |
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| T |
51159298 |
gtctatttgtgacttctgatcaagaatagcaaatatggaagcagtagcactttttgc |
51159242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 51202008 - 51201855
Alignment:
| Q |
15 |
atatatgaacatcaggtctagttggatacttgaaagtgacatgatggaactcaatatctcccttcacatcttccaatgtcattcctgattcttcactaga |
114 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||| ||||||| | |||||||| |||||||| || ||||||||||| ||||||||||| ||| | | |
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|
| T |
51202008 |
atatttgaatatcaggtctagtaggatacttgaaattgacatgcttaaactcaatttctcccttgacttcttccaatgtaattcctgattcatcagttgg |
51201909 |
T |
|
| Q |
115 |
gtctatttttga-ttcctgatcaagaatagcaaatatagaagcaacagaactttt |
168 |
Q |
| |
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||||| ||| ||||| |||||||||||||||||| |||||||| | |||||| |
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|
| T |
51201908 |
atctatgagtgacttcct-atcaagaatagcaaatatggaagcaactgcactttt |
51201855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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