View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_35 (Length: 302)
Name: NF3963_low_35
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_35 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 30186101 - 30185938
Alignment:
| Q |
139 |
cagttcaaaatttgcattttactgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacgccagtcccaaggcacacatact |
238 |
Q |
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| T |
30186101 |
cagttcaaaatttgcgttttattgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacaccagtcccaaggcacacatact |
30186002 |
T |
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| Q |
239 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagt |
302 |
Q |
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| T |
30186001 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagt |
30185938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 30186232 - 30186138
Alignment:
| Q |
10 |
aagaatatcttcatttgaagaatttgatatcagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
104 |
Q |
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| T |
30186232 |
aagaatatcttcatttgaagaatttgatatcagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
30186138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 142 - 302
Target Start/End: Original strand, 18200723 - 18200882
Alignment:
| Q |
142 |
ttcaaaatttgcattttactgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacgccagtcccaaggcacacatactaag |
241 |
Q |
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| T |
18200723 |
ttcaaaatttgtattttt-tgtgccaaactattgttgtgctagtttacactttgcaccaatattgaatttgaacaccagtcctgagggacacatactaag |
18200821 |
T |
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| Q |
242 |
gagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagt |
302 |
Q |
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| T |
18200822 |
gagttcatttggtacaaaaatagtttaaactcatcaccattgaactaattttttataaagt |
18200882 |
T |
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