View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3963_low_36 (Length: 301)
Name: NF3963_low_36
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_36 |
 | |
|
| [»] chr5 (14 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 38453181 - 38452902
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38453181 |
atggcaaagctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaag |
38453082 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38453081 |
atctcaatcatatgatgttagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaa |
38452982 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38452981 |
caaggcatcttttgattctttaacttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 38182871 - 38182592
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38182871 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38182772 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38182771 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38182672 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182671 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 38188260 - 38188539
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38188260 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38188359 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38188360 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38188459 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188460 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 38210097 - 38209818
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38210097 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38209998 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38209997 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38209898 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209897 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 38215485 - 38215764
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38215485 |
atggcaaagctttccacgttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38215584 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38215585 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38215684 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215685 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 38185518 - 38185797
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38185518 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38185617 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
38185618 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaa |
38185717 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185718 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 38212839 - 38212560
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38212839 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaag |
38212740 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| |||||| |||||||||| |
|
|
| T |
38212739 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaa |
38212640 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212639 |
caaggcatcttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 38169729 - 38170008
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
38169729 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaag |
38169828 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38169829 |
atctcaatcatattatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaa |
38169928 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169929 |
caaggcatcttttgattctttggcttccgtcaaatcgctcaatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 38443314 - 38443540
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaag |
121 |
Q |
| |
|
||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
38443314 |
atggcaaagctttcctcattcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaag |
38443413 |
T |
|
| Q |
122 |
atcttgatcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
221 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443414 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaa |
38443513 |
T |
|
| Q |
222 |
caaggcatcttttgattctttggcttc |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38443514 |
caaggcatcttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 38219953 - 38220126
Alignment:
| Q |
128 |
atcatatgatgttggagtatgatcatatgtgtcactttttacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggc |
227 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
38219953 |
atcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggc |
38220052 |
T |
|
| Q |
228 |
atcttttgattctttggcttccgccgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
301 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38220053 |
atcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
67 |
tatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatatgtgtcactttt |
166 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| | |||| | | ||| ||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
167 |
tacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatcttttgattctttggcttcc |
249 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 38183409 - 38183479
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183409 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38183479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 38214948 - 38214878
Alignment:
| Q |
22 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214948 |
atggcaaagctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38214878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 28399676 - 28399575
Alignment:
| Q |
56 |
tttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaaaaagatcttgatcatatgatgttggagtatgatcatat |
155 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| ||||| |||||||||| || | ||| | ||||| | ||| |||||||||| |||||||| |||| |
|
|
| T |
28399676 |
tttgcttcaagtatcaacttcctggtcaagatctcgatactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgattatat |
28399577 |
T |
|
| Q |
156 |
gt |
157 |
Q |
| |
|
|| |
|
|
| T |
28399576 |
gt |
28399575 |
T |
|
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