View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_37 (Length: 300)
Name: NF3963_low_37
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 30185961 - 30185697
Alignment:
| Q |
19 |
cacagaactaattttttatgaagtttagaattttctaactttgaaactattgtccaaccaaattgtttacagtgaaaaaagaggcagccagcaacacaa- |
117 |
Q |
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| T |
30185961 |
cacagaactaattttttatgaagtttagaattttctaactttgaaactattgtccaactaaattgttcacagtgaaaaaagaggcagccagcaacacaaa |
30185862 |
T |
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| Q |
118 |
-tatagtttcatcacccaccaactagcatgcctggttagactgaactagatgatgcttagataaaatattactagaggaaatttttcacacattgttatt |
216 |
Q |
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| T |
30185861 |
atatagtt-catcacccaccaactagcatgcctggttagactgaactagatgatgcttagattaaatattactagaggaaatttttcacacattgttatt |
30185763 |
T |
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| Q |
217 |
tagttaggtccgtatagtgtcaagatgtatattaaagttgaaaaccagttaccaaaactctgtttt |
282 |
Q |
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| T |
30185762 |
tagttaggtccgtatagtgtcaagatgtatattaaagttgaaaaccagttaccaaaactctgtttt |
30185697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 18200863 - 18200989
Alignment:
| Q |
23 |
gaactaattttttatgaagtttagaattttctaactttgaaactattgtccaaccaaattgtttacagtgaaaaaagaggcagccagcaacacaatatag |
122 |
Q |
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| T |
18200863 |
gaactaattttttataaagttaagatttttctaattttgaaactattgtccaaccaaattgtt--ctttgaaaaaagagg----cagcaacataaaatag |
18200956 |
T |
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| Q |
123 |
tttcatcacccaccaactagcatgcctggttag |
155 |
Q |
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| T |
18200957 |
tttcaccacccatcaactagaatgcctggttag |
18200989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 18201703 - 18201773
Alignment:
| Q |
178 |
taaaatattactagaggaaatttttcacacattgttatttagttaggtccgtatagtgtcaagatgtatat |
248 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |
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| T |
18201703 |
taaaatattactagaagaaatttttcacacattgttatttggttaggtccgtgtagtgttaagatgtatat |
18201773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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