View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_4 (Length: 625)
Name: NF3963_low_4
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 54809191 - 54809795
Alignment:
| Q |
1 |
ctcccttgcactctctaaacacccacatttcgaatacatatgaataagcgcagtacaaacattagctttaaaatcaatccccttctccttcacaatccca |
100 |
Q |
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| T |
54809191 |
ctcccttgcactctctaaacacccacattttgaatacatatgaataagcgcagtacaaacattagctttaaaatcaatccccttctccttcacaatccca |
54809290 |
T |
|
| Q |
101 |
tgcactttcctccccacactcagcgcccccgaatccgcacaagctctcaaaacagaaatgaccgtagcctcattgacatccactccaccttccaacattc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54809291 |
tgcactttcctccccacactcaacgcccccgaatccgcacaacctctcaaaacagaaatgaccgtagcctcattgacatccactccaacttccaacattc |
54809390 |
T |
|
| Q |
201 |
tctgaaacaactgaattgcctcaacagttagatgatgattaacaaaaccatcaatcatagacgtccaagaaacaacatctctatgagacattctatcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54809391 |
tctgaaacaactgaattgcctcaacagttagatgatgattaacaaaaccagcaatcatagacgtccaagaaacgacatctctatgagacattctatcaaa |
54809490 |
T |
|
| Q |
301 |
cacctgacgtgcaatacccaattcaccaatttcagagtacatatgaataagggcgttttgaatatataaatcgaaaccaaaacccatcttatttatgaag |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809491 |
cacctgacgtgcaataaccaattcaccaatttcagagtacatatgaataagggcgttttgaatatataaatcgaaaccaaaacccatcttatttatgaag |
54809590 |
T |
|
| Q |
401 |
ccatgaagctgttttgcttgttgggtaagtttcaaacgtccacaagacttcaaagcaaaggaataagtaaaggtatctggtttgggtacattggtgtgtg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
54809591 |
ccatgaagctgttttgcttgttgggtaagtttcaaacgtccacaagacttcaaagcaaaggaataagtaaaggtatcaggtttgggtacattggtatgtg |
54809690 |
T |
|
| Q |
501 |
gttgaagcatgaaaatgaagagagaaagtgcttgaaaatgatgggtagggttggaagtatgagaataagcacgaatgatggtgttgtagtagtaagagtt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54809691 |
gttgaagcatgaaaatgaagagagaaagtgcttgaaaatgatgggtagggttggaagtatgagaataagcacgaatgatggtgttgtagtagtaagagtt |
54809790 |
T |
|
| Q |
601 |
gagag |
605 |
Q |
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||||| |
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| T |
54809791 |
gagag |
54809795 |
T |
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