View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_49 (Length: 250)
Name: NF3963_low_49
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46530602 - 46530838
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46530602 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
46530701 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46530702 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
46530801 |
T |
|
| Q |
201 |
acttcagccatctcagcttccattttgcctggttcct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46530802 |
acttcagccatctcagcttccattttgcctggttcct |
46530838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46523174 - 46523410
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
46523174 |
ttctgtagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagtaaggtcatcttctgtaagccaagagggtaaggtgtcagg |
46523273 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
200 |
Q |
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|||||| | |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
46523274 |
agtatctgagttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacatatgcagtgcca |
46523373 |
T |
|
| Q |
201 |
acttcagccatctcagcttccattttgcctggttcct |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
46523374 |
acttcagccatctcagcttccattttgcctggttcct |
46523410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46328255 - 46328019
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| || |||||||| ||||||||||| ||| | ||||| |
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| T |
46328255 |
ttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagccaagagggcaagttatcagg |
46328156 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
46328155 |
ggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttttccgagttgtgaggatatttttcatcacatatgtagtgcca |
46328056 |
T |
|
| Q |
201 |
acttcagccatctcagcttccattttgcctggttcct |
237 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||| |
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| T |
46328055 |
acttcagccatctgagcttccatttcgcccggttcct |
46328019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46323777 - 46323541
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| || |||||||| |||||||| || || ||||||| |
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| T |
46323777 |
ttctatagtagttcaatcctccaacaaagcccgttttctcaaatttggaaacaaaataagcaagatcatcttctgtgagccaagaaggcaatttgtcagg |
46323678 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
200 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||| |
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| T |
46323677 |
ggtgtccgggttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacatatgcagtgcca |
46323578 |
T |
|
| Q |
201 |
acttcagccatctcagcttccattttgcctggttcct |
237 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
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| T |
46323577 |
acttcagccatctgagcttccattttgcccggttcct |
46323541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 46519630 - 46519866
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| || |||||| |||||||||||||||||||||| || |||||||| ||||||| ||| ||||| || || |
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| T |
46519630 |
ttctatagtaattcaatcctccagtgaagccagtcttctcatatttggagacaaaataagcaagatcgtcttctgtgagccaagtgggcaaggtttctgg |
46519729 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtgcca |
200 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||| |
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| T |
46519730 |
ggtatccggattgaatcctgttccaaactctcctttgggaagtattggaggaccagttttgcgagttgtgaggacatttttcagcacatatgcagtgcca |
46519829 |
T |
|
| Q |
201 |
acttcagccatctcagcttccattttgcctggttcct |
237 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| ||||||| |
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| T |
46519830 |
acctcagctatctcagcttctattttgccaggttcct |
46519866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46464378 - 46464620
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtc---ttcttctgtaagccaagagggtaaggtgtc |
97 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| |
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| T |
46464378 |
ttctgtagtaattcaatcctccagtgaagcctgttttgtcaaatttagagacaaagtaagcaaggtcgtcttcttctgtaagccaagaggacaaggtgta |
46464477 |
T |
|
| Q |
98 |
aggagtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatcacatatgcagtg |
197 |
Q |
| |
|
|| |||||||||||||||||||||| ||||| || ||||||| ||||| |||||| ||| || ||||||||||||||||||| |||||| || ||| |
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| T |
46464478 |
tgggatatccgggttgaatccagttccgtactcgccgttgggaagcattggaggaccaatttcccgtgttgtgaggatatttttcagcacataagcggtg |
46464577 |
T |
|
| Q |
198 |
ccaacttcagccatctcagcttccattttgcctggttcctatg |
240 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||| |
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|
| T |
46464578 |
ccaacttcaaccatcttagcttccattttacctggttcctatg |
46464620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 88816 - 88663
Alignment:
| Q |
1 |
ttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaagagggtaaggtgtcagg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| | ||||| | ||| ||||| |||| |||||||| | ||||||||| |||||| | || || |
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|
| T |
88816 |
ttctatagtagttcaaccctccagtgaagccagttttgttgaatttagtaacataataatcaagatcttcttcggaaagccaagatggtaagatatctgg |
88717 |
T |
|
| Q |
101 |
agtatccgggttgaatccagttccatactctcccttgggaaatattgggggacc |
154 |
Q |
| |
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||||||| ||||||||||||||||||||||| || || || ||||| ||||| |
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|
| T |
88716 |
catatccggattgaatccagttccatactctccttttgggaaaattggaggacc |
88663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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