View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3963_low_5 (Length: 595)
Name: NF3963_low_5
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_5 |
 | |
|
| [»] scaffold0283 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 181 - 573
Target Start/End: Original strand, 22270253 - 22270649
Alignment:
| Q |
181 |
atcagaagatatataccatta----gtactaaattatttgttttaatgtatattaggttaagattggtgacttaggtttggcagcaattgtgggaaagaa |
276 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270253 |
atcagaagatatataccattaattagtactaaattatttgttttaatgtatattaggttaagattggtgacttaggtttggcagcaattgtgggaaagaa |
22270352 |
T |
|
| Q |
277 |
ccactcagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacgcagaaatggtagacatatactcatttggaatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22270353 |
ccactcagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatg |
22270452 |
T |
|
| Q |
377 |
ttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatcct |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22270453 |
ttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatcct |
22270552 |
T |
|
| Q |
477 |
tgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
573 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22270553 |
tgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgctgaggaattgctaaaggatcc |
22270649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 181 - 573
Target Start/End: Complemental strand, 22263587 - 22263191
Alignment:
| Q |
181 |
atcagaagatatataccatta----gtactaaattatttgttttaatgtatattaggttaagattggtgacttaggtttggcagcaattgtgggaaagaa |
276 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22263587 |
atcagaagatatataccattaattagtactaaattatttgttttaatgtatattaggttaagattggtgacttaggtttggcagcaattgtgggaaagaa |
22263488 |
T |
|
| Q |
277 |
ccactcagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacgcagaaatggtagacatatactcatttggaatg |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22263487 |
ccactcagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacacagaaatggtagacatatactcatttggaatg |
22263388 |
T |
|
| Q |
377 |
ttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatcct |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22263387 |
ttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatcct |
22263288 |
T |
|
| Q |
477 |
tgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
573 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22263287 |
tgaacaagataaaagatgctgaagtcaagactttcatcgaaaagtgtcttgctcaaacaagggctagaccttctgctgaggaattgctaaaggatcc |
22263191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 222 - 573
Target Start/End: Complemental strand, 45873971 - 45873620
Alignment:
| Q |
222 |
atgtatattaggttaagattggtgacttaggtttggcagcaattgtgggaaagaaccactcagcacattcaattctaggcacaccggaatttatggcacc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| || ||||| || ||||||||||| |
|
|
| T |
45873971 |
atgtatattaggttaagattggtgacttaggtttggcagcaattgttggaaagaatcatacagcacattcagttcttgggacaccagagtttatggcacc |
45873872 |
T |
|
| Q |
322 |
agagctatatgaagagaattacgcagaaatggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgt |
421 |
Q |
| |
|
|| ||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
|
|
| T |
45873871 |
tgaattatatgaagagaattacactgaattggtggacatatactcatttggaatgttagtactggagatggtgacacgagagattccttatagtgaatgt |
45873772 |
T |
|
| Q |
422 |
gacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||| | ||||||||| ||||||| ||||||| |
|
|
| T |
45873771 |
gacaatgttgcaaagatatacaagaaggtgtcatcaggagtgagaccacaatccttgaacaagataaaagacgcagaagtgaaggctttcattgaaaagt |
45873672 |
T |
|
| Q |
522 |
gtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
573 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
45873671 |
gtcttgcaaaaccaagggacagaccttctgctgaggaattgctaaaggatcc |
45873620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 399 - 573
Target Start/End: Original strand, 22265134 - 22265308
Alignment:
| Q |
399 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
22265134 |
ttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagataaaagatgctga |
22265233 |
T |
|
| Q |
499 |
agtgaagactttcatcgaaaagtgtcttgctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
573 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
22265234 |
agtcaagactttcatcgaaaagtgtcttgctcaatcaagggctagaccttctgctgaggaattgctaaaggatcc |
22265308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 22263767 - 22263636
Alignment:
| Q |
1 |
taaggctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcattcatagagacctcaactgcagtaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
22263767 |
taaggctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaat |
22263668 |
T |
|
| Q |
101 |
gtttttgtcaatggaaatactggccaggtaaa |
132 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
22263667 |
gtgtttgtcaatggaaatactggccaggtaaa |
22263636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 22270073 - 22270204
Alignment:
| Q |
1 |
taaggctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcattcatagagacctcaactgcagtaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
22270073 |
taaggctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaat |
22270172 |
T |
|
| Q |
101 |
gtttttgtcaatggaaatactggccaggtaaa |
132 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
22270173 |
gtgtttgtcaatggaaatactggccaggtaaa |
22270204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 45874336 - 45874205
Alignment:
| Q |
1 |
taaggctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcattcatagagacctcaactgcagtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
45874336 |
taaggctttgaagaagtggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccatgtatcattcatagagatctcaattgcagcaat |
45874237 |
T |
|
| Q |
101 |
gtttttgtcaatggaaatactggccaggtaaa |
132 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| |
|
|
| T |
45874236 |
gtgtttatcaatggaaatactggccaggtaaa |
45874205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 228 - 573
Target Start/End: Complemental strand, 10082486 - 10082141
Alignment:
| Q |
228 |
attaggttaagattggtgacttaggtttggcagcaattgtgggaaagaaccactcagcacattcaattctaggcacaccggaatttatggcaccagagct |
327 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| || |||| |||||||||||||||||||||||| | |
|
|
| T |
10082486 |
attaggttaagatcggtgacttaggtttggcaataattgtgggaaagaaccattcagcacattcagttttaggtacaccggaatttatggcaccagagtt |
10082387 |
T |
|
| Q |
328 |
atatgaagagaattacgcagaaatggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaat |
427 |
Q |
| |
|
|||||||||||||||| | || ||||| |||||||||||||| |||||||||||| ||||||||||||||| || ||||| ||||| |||||||| ||| |
|
|
| T |
10082386 |
atatgaagagaattacactgagatggttgacatatactcattcggaatgttagtactagagatggtgacacgagagattccgtatagcgaatgtgataat |
10082287 |
T |
|
| Q |
428 |
gttgcaaagatatacaagaaggtgacttcaggtgtgagaccacaatccttgaacaagattaaagatgttgaagtgaagactttcatcgaaaagtgtcttg |
527 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| |||||||| ||||| ||||||||||| || |||| |||||||||| ||||||| |||| |||||||| |
|
|
| T |
10082286 |
gttgcgaagatatacaaaaaggtgtcttcaggcgtgagacctcaatcgttgaacaagataaaggatgctgaagtgaaggctttcattgaaaggtgtcttg |
10082187 |
T |
|
| Q |
528 |
ctcaaccaagggctagaccttctgcggaggatttgctaaaggatcc |
573 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||| ||||| |
|
|
| T |
10082186 |
ctcaaccaagggctagaccttctgctgatgaattgctaaaagatcc |
10082141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 10082965 - 10082839
Alignment:
| Q |
5 |
gctttgaagaagtggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcattcatagagacctcaactgcagtaatgttt |
104 |
Q |
| |
|
|||||||||||||||||||| || || ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10082965 |
gctttgaagaagtggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgttt |
10082866 |
T |
|
| Q |
105 |
ttgtcaatggaaatactggccaggtaa |
131 |
Q |
| |
|
||||||| ||||| || || ||||||| |
|
|
| T |
10082865 |
ttgtcaacggaaacaccggtcaggtaa |
10082839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 231 - 447
Target Start/End: Complemental strand, 41244945 - 41244729
Alignment:
| Q |
231 |
aggttaagattggtgacttaggtttggcagcaattgtgggaaagaaccactcagcacattcaattctaggcacaccggaatttatggcaccagagctata |
330 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||||| |||||||| || |||||||| ||||| |||| |
|
|
| T |
41244945 |
aggttaagattggtgacttgggtttagcagcaattgtggggaagaatcatattgcacacacaattctcggcacaccagagtttatggctccagaattata |
41244846 |
T |
|
| Q |
331 |
tgaagagaattacgcagaaatggtagacatatactcatttggaatgttagtattagagatggtgacacttgaaattccatatagtgaatgtgacaatgtt |
430 |
Q |
| |
|
|| || | ||| ||||| |||| ||||||||||||||||| |||| |||||||| ||||||||| | |||||||| |||||||| |||||||||||| |
|
|
| T |
41244845 |
cgacgaagactacacagaattggtggacatatactcatttggtatgtgtgtattagaaatggtgacattggaaattccttatagtgagtgtgacaatgtt |
41244746 |
T |
|
| Q |
431 |
gcaaagatatacaagaa |
447 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
41244745 |
gccaaaatatacaagaa |
41244729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 450
Target Start/End: Original strand, 42726719 - 42726887
Alignment:
| Q |
282 |
cagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacgcagaaatggtagacatatactcatttggaatgttagt |
381 |
Q |
| |
|
|||||||||||||| |||| || || || | |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
42726719 |
cagcacattcaattttagggactcctgagtacatggcacctgagctgtatgaggaagattacactgaaatggtagacatatactcatttggaatgtgttt |
42726818 |
T |
|
| Q |
382 |
attagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggt |
450 |
Q |
| |
|
| || ||||| ||| | || || ||||||||||||||||||| ||| || ||||||||||| ||||| |
|
|
| T |
42726819 |
gcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagccaagatatacaaaaaggt |
42726887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 41245699 - 41245604
Alignment:
| Q |
36 |
aagggttgaattatttgcatgttcatgatccttgtatcattcatagagacctcaactgcagtaatgtttttgtcaatggaaatactggccaggtaa |
131 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| ||||| ||| ||||||||||| |
|
|
| T |
41245699 |
aagggttgaattatttgcacactcatgagccttgcatcattcatagagatctcaattgcagtaatgtgtttgttaatgggaatgttggccaggtaa |
41245604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 520 - 552
Target Start/End: Complemental strand, 41244656 - 41244624
Alignment:
| Q |
520 |
gtgtcttgctcaaccaagggctagaccttctgc |
552 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
41244656 |
gtgtcttgctcagccaagggctagaccttctgc |
41244624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 450
Target Start/End: Original strand, 20693 - 20861
Alignment:
| Q |
282 |
cagcacattcaattctaggcacaccggaatttatggcaccagagctatatgaagagaattacgcagaaatggtagacatatactcatttggaatgttagt |
381 |
Q |
| |
|
|||||||||||||| |||| || || || | |||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
20693 |
cagcacattcaattttagggactcctgagtacatggcacctgagctgtatgaggaagattacactgaaatggtagacatatactcatttggaatgtgttt |
20792 |
T |
|
| Q |
382 |
attagagatggtgacacttgaaattccatatagtgaatgtgacaatgttgcaaagatatacaagaaggt |
450 |
Q |
| |
|
| || ||||| ||| | || || ||||||||||||||||||| ||| || ||||||||||| ||||| |
|
|
| T |
20793 |
gcttgaaatggttacaatggagataccatatagtgaatgtgacagtgtagccaagatatacaaaaaggt |
20861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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