View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_50 (Length: 249)
Name: NF3963_low_50
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 30886032 - 30885793
Alignment:
| Q |
17 |
ttacttagatagttcccttacctccatcattccttcctctgtaactttataacttaggggaatagatccttccaagagattaacggaaacaaaaatgaag |
116 |
Q |
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| T |
30886032 |
ttacttagatagttcccttacctccatcattccttcctctgtaactttataacttaggggaatagatccttccaagagattaacggaaacaaaaatgaag |
30885933 |
T |
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| Q |
117 |
tctaaaagcacgcttatagaaggaatgaatgagattcaaaaggatctcaggtcataattaattttgaatgtaaatatagatattaattattaa------- |
209 |
Q |
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| T |
30885932 |
tctaaaagcacgcttatagaaggaatgaatgagattcaaaaggatctcaggtcataattaattttgaatgtaaatatagatattaattattaatgaataa |
30885833 |
T |
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| Q |
210 |
tgaaaaatgaaggctgcattatactatcaaatcaaacccc |
249 |
Q |
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| T |
30885832 |
tgaaaaatgaaggttgcattatactatcaaatcaaacccc |
30885793 |
T |
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