View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3963_low_51 (Length: 248)

Name: NF3963_low_51
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3963_low_51
NF3963_low_51
[»] chr4 (3 HSPs)
chr4 (1-231)||(32593551-32593780)
chr4 (157-221)||(54305569-54305633)
chr4 (157-221)||(55680650-55680714)
[»] chr2 (5 HSPs)
chr2 (157-226)||(18724891-18724961)
chr2 (159-225)||(41848934-41849000)
chr2 (162-226)||(44650138-44650202)
chr2 (157-223)||(17651172-17651238)
chr2 (157-221)||(9929544-9929608)
[»] chr1 (3 HSPs)
chr1 (157-225)||(16426345-16426413)
chr1 (157-225)||(50127495-50127563)
chr1 (157-222)||(30883217-30883282)
[»] chr8 (2 HSPs)
chr8 (162-231)||(3159758-3159827)
chr8 (162-225)||(27401741-27401804)
[»] chr7 (5 HSPs)
chr7 (161-222)||(11812685-11812746)
chr7 (168-231)||(9730082-9730145)
chr7 (105-223)||(27616186-27616304)
chr7 (161-222)||(11809454-11809515)
chr7 (161-221)||(11815688-11815748)
[»] chr5 (1 HSPs)
chr5 (161-230)||(41815788-41815856)
[»] scaffold0019 (1 HSPs)
scaffold0019 (152-223)||(70256-70327)
[»] chr6 (6 HSPs)
chr6 (157-231)||(2602003-2602077)
chr6 (157-221)||(34013450-34013514)
chr6 (159-221)||(19294300-19294362)
chr6 (159-223)||(56923-56987)
chr6 (157-221)||(14494624-14494688)
chr6 (157-221)||(34011336-34011400)
[»] chr3 (3 HSPs)
chr3 (158-221)||(17716029-17716092)
chr3 (158-221)||(19017258-19017321)
chr3 (159-223)||(26565226-26565290)
[»] scaffold0325 (1 HSPs)
scaffold0325 (160-221)||(12794-12855)
[»] scaffold1723 (1 HSPs)
scaffold1723 (192-232)||(510-550)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32593551 - 32593780
Alignment:
Q  1 caacatattactttcttgaagcattaatccatgatggataatgatgaggttcctccttctccaactcaccatatgactactacttgtcaaacaacttatt 100  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32593551 caacatattactttcttgaagcgttaatccatgatcgataatgatgaggttcctccttctccaactcaccatatgactactacttgtcaaacaacttatt 32593650  T
Q  101 taacctatgaagcacatactccgatacggacatttgacatgatattgacatggatccgtcgacaccgctaatgtaaaaaccataggacatggacaccgct 200  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||| ||| | ||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  32593651 taacctatcaagcacatactccgacacggacatttgacataatactgata-ggatccgtcgataccgctaatgtaaaaaccataggacactgacaccgct 32593749  T
Q  201 acctgtatattaatttatttataaatgatct 231  Q
    ||||||||| |||||||||||||||||||||    
T  32593750 acctgtatactaatttatttataaatgatct 32593780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 54305569 - 54305633
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||| ||||||||||||||  ||||||||  ||||||||||| | ||| ||||||||||||    
T  54305569 cgtcgacatcgctaatgtaaaaattataggacaccgacaccgctacatatatgttaatttattta 54305633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 55680650 - 55680714
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||||||  ||||||||  ||||||| ||| | ||| ||||||||||||    
T  55680650 cgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 55680714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 18724961 - 18724891
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaa-ccataggacatggacaccgctacctgtatattaatttatttataaat 226  Q
    ||||||||||| ||||||||||| ||||||||||  ||||||||||||| |||||||||||||||||||||    
T  18724961 cgtcgacaccgataatgtaaaaaaccataggacaccgacaccgctacctatatattaatttatttataaat 18724891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 41848934 - 41849000
Alignment:
Q  159 tcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaa 225  Q
    |||||||||||||||||||||  ||||||||  |||||||||| || ||||||||||||||||||||    
T  41848934 tcgacaccgctaatgtaaaaaatataggacaccgacaccgctatctatatattaatttatttataaa 41849000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 44650202 - 44650138
Alignment:
Q  162 acaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaat 226  Q
    |||||| |||| ||||||  ||||||||| ||||| ||||| | |||||||||||||||||||||    
T  44650202 acaccgttaatataaaaaatataggacattgacactgctacatatatattaatttatttataaat 44650138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 17651172 - 17651238
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttata 223  Q
    |||||||| ||||||| |||||| ||||||| |  |||||||||  || ||||||||||||||||||    
T  17651172 cgtcgacatcgctaatataaaaaacataggatactgacaccgctggctatatattaatttatttata 17651238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 9929544 - 9929608
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||||||  ||||||||   |||| ||||| | ||| ||||||||||||    
T  9929544 cgtcgacaccgctaatgtaaaaaatataggacaccaacactgctacatatatgttaatttattta 9929608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 16426345 - 16426413
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaa 225  Q
    |||| |||||| ||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||    
T  16426345 cgtcaacaccgttaatgtaaaaagcataggacactgacaccgctacctatatattaatttatttataaa 16426413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 50127563 - 50127495
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaa 225  Q
    |||||| || ||||||||||||| |||||||||| | |||||||| || ||||||||||||||||||||    
T  50127563 cgtcgatactgctaatgtaaaaaacataggacatcgccaccgctatctatatattaatttatttataaa 50127495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 30883282 - 30883217
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttat 222  Q
    |||| |||||||||||||||||| |||||||||  ||||||||| | | |||||| ||| ||||||    
T  30883282 cgtcaacaccgctaatgtaaaaaacataggacaccgacaccgctgcatatatatttattaatttat 30883217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 3159758 - 3159827
Alignment:
Q  162 acaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaatgatct 231  Q
    |||||||||||||||||| |||||||||  ||||| |||||||||||| |||||||||||| || |||||    
T  3159758 acaccgctaatgtaaaaaacataggacaccgacactgctacctgtatactaatttatttatgaaagatct 3159827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 27401741 - 27401804
Alignment:
Q  162 acaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaa 225  Q
    |||||||||||||||||| ||||||||    | ||||||| || ||||||||||||||||||||    
T  27401741 acaccgctaatgtaaaaaacataggacgccaataccgctatctatatattaatttatttataaa 27401804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 11812746 - 11812685
Alignment:
Q  161 gacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttat 222  Q
    ||||||||||||||||||| |||||||||  ||||| ||||||| |||||||||||||||||    
T  11812746 gacaccgctaatgtaaaaaacataggacaccgacacagctacctatatattaatttatttat 11812685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 9730145 - 9730082
Alignment:
Q  168 ctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaatgatct 231  Q
    ||||||||||||  |||| |||  ||||||||||||| |||||||||||||||||||| |||||    
T  9730145 ctaatgtaaaaaatatagaacactgacaccgctacctatatattaatttatttataaaagatct 9730082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 27616186 - 27616304
Alignment:
Q  105 ctatgaagcacatactccgatacggacatttgacatgatattgacatggatccgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacct 204  Q
    ||||||||||   ||||||| ||| |||  ||||| |||| ||||| |||   |||||||||| |||||||||||  | ||||||  ||||||||||| |    
T  27616186 ctatgaagcatggactccgacacgtacacctgacacgatactgacacggacatgtcgacaccgttaatgtaaaaaatacaggacaccgacaccgctacat 27616285  T
Q  205 gtatattaatttatttata 223  Q
    |||| ||||||||||||||    
T  27616286 gtatgttaatttatttata 27616304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 11809515 - 11809454
Alignment:
Q  161 gacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttat 222  Q
    |||||| |||||||||||| |||| ||||  ||||| ||||||| |||||||||||||||||    
T  11809515 gacaccactaatgtaaaaatcataagacaccgacactgctacctatatattaatttatttat 11809454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 11815748 - 11815688
Alignment:
Q  161 gacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||  ||||||||  ||||| |||| || | ||||||||||||||    
T  11815748 gacaccgctaatgtaaaaaatataggacactgacactgctatctatttattaatttattta 11815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 41815856 - 41815788
Alignment:
Q  161 gacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaatgatc 230  Q
    |||||||||||||||||||  ||||||||  ||||||||||| | |||||||||||||||||||| ||||    
T  41815856 gacaccgctaatgtaaaaaa-ataggacaccgacaccgctacatatatattaatttatttataaaagatc 41815788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 70327 - 70256
Alignment:
Q  152 ggatccgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttata 223  Q
    |||| ||||||||||||||||||||||| || || |||| |||||| |||| ||||||| |||||| |||||    
T  70327 ggatacgtcgacaccgctaatgtaaaaaacacagtacatagacaccactacatgtatatcaatttacttata 70256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 2602003 - 2602077
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttataaatgatct 231  Q
    ||||||||| | ||||||||||| | | |||||  |||||| |||||| |||||||||||||||||||| |||||    
T  2602003 cgtcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttataaaagatct 2602077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 34013450 - 34013514
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||||||  ||||||||  ||||||| ||| | ||| ||||||||||||    
T  34013450 cgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34013514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 19294300 - 19294362
Alignment:
Q  159 tcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||||  ||||||||  || |||||||| | ||| ||||||||||||    
T  19294300 tcgacaccgctaatgtaaaaaatataggacaccgataccgctacatatatgttaatttattta 19294362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 56923 - 56987
Alignment:
Q  159 tcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttata 223  Q
    |||||||||||||| ||||||  |||||||| | |||||||||| | ||| ||||||||| ||||    
T  56923 tcgacaccgctaatataaaaaatataggacacgaacaccgctacatatatgttaatttatctata 56987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 14494688 - 14494624
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    ||||||||||||||||||||||   | ||||||  ||||||||||| | ||| ||||||||||||    
T  14494688 cgtcgacaccgctaatgtaaaatatacaggacaccgacaccgctacatatatgttaatttattta 14494624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 34011400 - 34011336
Alignment:
Q  157 cgtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    ||||||| |||||||||||||||  ||||||||  ||||||| ||| | ||| ||||||||||||    
T  34011400 cgtcgacgccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttattta 34011336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 17716092 - 17716029
Alignment:
Q  158 gtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||| |  ||||||||  ||||||||||| | |||| |||||||||||    
T  17716092 gtcgacaccgctaatgtaaataatataggacactgacaccgctacatatatactaatttattta 17716029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 19017321 - 19017258
Alignment:
Q  158 gtcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||||||||||||||||| |  ||||||||  ||||||||||| | |||| |||||||||||    
T  19017321 gtcgacaccgctaatgtaaataatataggacactgacaccgctacatatatactaatttattta 19017258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 26565226 - 26565290
Alignment:
Q  159 tcgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttatttata 223  Q
    |||||||||||||||||||||  | ||||||  ||||||| ||| | ||| ||||||||||||||    
T  26565226 tcgacaccgctaatgtaaaaaatacaggacactgacaccgttacatatatgttaatttatttata 26565290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 12794 - 12855
Alignment:
Q  160 cgacaccgctaatgtaaaaaccataggacatggacaccgctacctgtatattaatttattta 221  Q
    |||||| |||||||||||||  | ||||||  ||||||||||| | ||||||||||||||||    
T  12794 cgacactgctaatgtaaaaaatacaggacaccgacaccgctacatatatattaatttattta 12855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 550 - 510
Alignment:
Q  192 gacaccgctacctgtatattaatttatttataaatgatctt 232  Q
    |||||||||| || |||||||||||||||||||| ||||||    
T  550 gacaccgctatctatatattaatttatttataaaagatctt 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University