View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_54 (Length: 237)
Name: NF3963_low_54
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 49735596 - 49735826
Alignment:
| Q |
1 |
agaaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgtcaaacatatatagagcatagtaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49735596 |
agaaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgtcaaacatatatagagcatagtaacat |
49735695 |
T |
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| Q |
101 |
catgtcaaatggagattagtactaattaaatatataaagcaaaatatgtactaaataaatttagacatgctttgagacgacaattgaatcacatttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49735696 |
catgtcaaatggagattagtactaattaaatatataaagcaaaatatgtactaaataaatttagacatgctttgagacgagaattgaatcacatttgtgt |
49735795 |
T |
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| Q |
201 |
gtataaggcacaaacccttgcatctgtgctg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
49735796 |
gtataaggcacaaacccttgcatctgtgctg |
49735826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 51214513 - 51214350
Alignment:
| Q |
1 |
agaaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgtcaaacatatatagagcatagtaacat |
100 |
Q |
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||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| |||||||||| ||||| |
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| T |
51214513 |
agaaagcagaaactgttctgatattccctactgcgtcgttcgctacttgacttgcttcctcgtatagtttctgtgaaacatatttagagcatagaaacat |
51214414 |
T |
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| Q |
101 |
catgtcaaatggagattagtactaattaaatatataaagcaaaatatgtactaaataaatttaga |
165 |
Q |
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| T |
51214413 |
catgtcaaatgaagattagtacaaatttcatatagaaa-caaaatatgtactaaataaatttaga |
51214350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 51201443 - 51201389
Alignment:
| Q |
11 |
aactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatac |
65 |
Q |
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| T |
51201443 |
aactgttcttatactccctactgcatcattcgccacttgacttgcttcctcatac |
51201389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 51147502 - 51147431
Alignment:
| Q |
3 |
aaagcggaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgt |
74 |
Q |
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|||| |||||| ||||| ||| ||||||| |||||||| || ||||||||||||||||| ||| ||||||| |
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| T |
51147502 |
aaagaggaaacagttcttatactccctacagcatcatttgccacttgacttgcttcctcgtacaatttctgt |
51147431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 29935513 - 29935578
Alignment:
| Q |
9 |
gaaactgttctgatattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgt |
74 |
Q |
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||||||||||| ||| |||||| |||||||| || ||||||||||||||||| ||| ||||||| |
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| T |
29935513 |
gaaactgttcttatacaccctaccgcatcatttgccacttgacttgcttcctcgtacaatttctgt |
29935578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 34586705 - 34586652
Alignment:
| Q |
21 |
atattccctactgcatcattcgctacttgacttgcttcctcatactgtttctgt |
74 |
Q |
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|||||||||||||||||||||| | ||||||||| ||| |||||| ||||||| |
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| T |
34586705 |
atattccctactgcatcattcgttgcttgacttgattcgtcatacaatttctgt |
34586652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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