View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3963_low_7 (Length: 549)
Name: NF3963_low_7
Description: NF3963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3963_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 21483642 - 21484166
Alignment:
| Q |
17 |
acaatgagaggtgtttgatctagccatgatgtttggttgaaacacgtgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgacacggatctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21483642 |
acaatgagaggtgtttgatctagccatgatgtttggttgaaacatgcgttcgattcaggtgcaaatgtgtttgctgtgttttggttctgacacggatctt |
21483741 |
T |
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| Q |
117 |
gaaaatgttgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttgtgaagatgactagtttgaaccca |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21483742 |
gaaaatgatgttgttgaggaacaatatttgaaggtattattgtgttcgtgttggcgttttctttgagtcttttgttatgaagatgactagtttgaaccca |
21483841 |
T |
|
| Q |
217 |
ttcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcgatcgtcgatttcttaagcttcacattcctc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
21483842 |
ttcaagaatgagcttcaacaattgtttcatcccttcttttccaccacctaatctcctagcagcactttcaatcgttgatttcttaagcttcacattcctc |
21483941 |
T |
|
| Q |
317 |
aaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcacctaattcatctc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21483942 |
aaatcattcgcggagacactgtctttgttcgatttaagccactccaagaaaaccatactcatttcatcacttacaccatcacatgcacctaattcatctc |
21484041 |
T |
|
| Q |
417 |
cttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatg |
516 |
Q |
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| T |
21484042 |
cttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatg |
21484141 |
T |
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| Q |
517 |
cactatcatcggaacttgatgatgt |
541 |
Q |
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|||||||||||||||||| |||||| |
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| T |
21484142 |
cactatcatcggaacttgttgatgt |
21484166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 26551516 - 26551577
Alignment:
| Q |
464 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcat |
525 |
Q |
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|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcat |
26551577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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