View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3964_high_1 (Length: 257)
Name: NF3964_high_1
Description: NF3964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3964_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 17896747 - 17896970
Alignment:
| Q |
26 |
gcttggagtgatgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatt |
125 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17896747 |
gcttggagggatgatttaatttcgaaaaataaattgatcatatgattgaagtatgctctacgtttgagcagttataatataagttgtttagtgttcaatt |
17896846 |
T |
|
| Q |
126 |
tcttcatatacttgacagatgcataattaatcatcattgttgaaaggtataatcttttacttacaatttgtatgtcatgtaggacaatatatttctcctt |
225 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17896847 |
tcttcatatacttaacagatgcataattaatcatcattgttgaaaggtataatcttttacttacaatttgtatgtcatgtaggacaatatatttctcctt |
17896946 |
T |
|
| Q |
226 |
ttcatatctcattttgttcatctc |
249 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
17896947 |
ttcatatctcattttgttcatctc |
17896970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 17897770 - 17897546
Alignment:
| Q |
26 |
gcttggagtgatgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatt |
125 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17897770 |
gcttggagggatgatttaatttcaaaaaataaattgatcatatgcttgaagtatgctctacgtttgaaaagttataatataagttgcttagtgttcaatt |
17897671 |
T |
|
| Q |
126 |
tcttcatatacttgacagatgcataattaatcatcattgttgaaaggtataatcttttacttacaatttgtatgtcatgtaggacaatatatttctcctt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17897670 |
tcttcatatacttgacagatgcataattaatcatcattgttaaaaggtataatcttttaattataatttgtatgtcatgtaggacaatatatttctcctt |
17897571 |
T |
|
| Q |
226 |
ttcatatctcattttgttcatctct |
250 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17897570 |
ttcatatctcattttgttcatctct |
17897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 17975881 - 17975662
Alignment:
| Q |
26 |
gcttggagtgatgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatt |
125 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
17975881 |
gcttggtgggatgatttaatttcaaaaaataaattgatcatatgcttgaagtatgctctacatttgagca----taatacaagttgcttagtgttcaatt |
17975786 |
T |
|
| Q |
126 |
tcttcatatacttgacagatgcataattaatcatcattgttgaaaggtataatcttttacttacaatttgtatgtcatgtaggacaatatatttctcctt |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| | |||||||| || |||||| ||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
17975785 |
tcttcatatacttgacagatgcagaattaatcaccattgctaaaaggtatcattttttacatacaatttgtatgtcttgtaggacaatatatttttcctt |
17975686 |
T |
|
| Q |
226 |
ttcatatctcattttgttcatctc |
249 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
17975685 |
ttcctatctcattttgttcatctc |
17975662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 17974334 - 17974544
Alignment:
| Q |
35 |
gatgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatttcttcatat |
134 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17974334 |
gatgatttaatttcaaaaaataagttgatcatatgcttaaagtatgctctacatttgagca----taatacaagttgcttagtgttcaatttcttcatat |
17974429 |
T |
|
| Q |
135 |
acttgacagatgcataattaatcatcattgttgaaaggtataatcttttacttacaatttgtatgtcatgtaggacaatatatttctccttttcatatct |
234 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||||| || |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
17974430 |
acttgacagatgcagaattaatcaccattgctgaaaggtatcattttttacaaacaatttgtatgtcttgtaggacaatatatttttccttttcctatct |
17974529 |
T |
|
| Q |
235 |
cattttgttcatctc |
249 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17974530 |
cattttgttcatctc |
17974544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 17953292 - 17953334
Alignment:
| Q |
180 |
ttttacttacaatttgtatgtcatgtaggacaatatatttctc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17953292 |
ttttacttacaatttgtatgtcatgtaggagaatatatttctc |
17953334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 17952426 - 17952503
Alignment:
| Q |
36 |
atgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgct |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||| | ||||||||||| ||| |||| ||||| || |||||||| |
|
|
| T |
17952426 |
atgatttaatttcagaaaataaattgatcacatgcttgatgtatgctctacatttaagcaattatagtaaaagttgct |
17952503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 10037634 - 10037869
Alignment:
| Q |
24 |
atgcttggagtgatgatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaa |
123 |
Q |
| |
|
|||||||||| | |||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
10037634 |
atgcttggaggggcgatttagtttcaaaatgtaaattgatcacatgcttgaagtatgctctacgtttgagcaattacaatacaagttgcttagtgttcaa |
10037733 |
T |
|
| Q |
124 |
tttcttcatatacttgacagatgcataattaatcatcattgttgaaaggtataatcttttactt----------acaatttgtatgtcatgtaggacaat |
213 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||||| | |||||||| || |||||||| |||||||| |||| |||||||||||| |
|
|
| T |
10037734 |
tttcttcatatacttacaagatgcagaattaatcttcattgctaaaaggtatcattttttacttacaattgtacacaatttgcatgttatgtaggacaat |
10037833 |
T |
|
| Q |
214 |
atatttctccttttcatatctcattttgttcatctc |
249 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
10037834 |
atatttctccttttcctatctcattttattcatctc |
10037869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 20419975 - 20420195
Alignment:
| Q |
38 |
gatttaatttcgaaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatttcttcatatact |
137 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||| ||||||||||||| | |||||| ||| |||| | || | ||| |||||||||||||||||||| |
|
|
| T |
20419975 |
gatttagtttcaaaaaataaattgatcacatgcttgaagtatgctctacatatgagcaatta-aatactaattacctagggttcaatttcttcatatact |
20420073 |
T |
|
| Q |
138 |
tgacagatgcataattaatcatcattgttgaaaggtataatcttttactt----------acaatttgtatgtcatgtaggacaatatatttctcctttt |
227 |
Q |
| |
|
||||||||||| | |||||| |||||| |||||||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20420074 |
tgacagatgcaaagttaatcttcattgctgaaaggtatcatttgttacttacaactgtacacaatttgtatgttatgtaggacaatatatttctcctttt |
20420173 |
T |
|
| Q |
228 |
catatctcattttgttcatctc |
249 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
20420174 |
cctatctcattttgttcatctc |
20420195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 20522536 - 20522746
Alignment:
| Q |
50 |
aaaaataaattgatcatatgcttcaagtatgctctacgtttgagcagttataatataagttgcttagtgttcaatttcttcatatacttgacagatgcat |
149 |
Q |
| |
|
||||||||| |||||| |||||| |||||||||| ||| ||||||| ||| |||| ||||||||| ||||| |||| ||||||||||||||||||| || |
|
|
| T |
20522536 |
aaaaataaaatgatcacatgctttaagtatgctccacggttgagcaattacaatacaagttgcttggtgttgaattccttcatatacttgacagatccag |
20522635 |
T |
|
| Q |
150 |
aattaatcatcattgttgaaaggtataatcttttactt-----------acaatttgtatgtcatgtaggacaatatatttctccttttcatatctcatt |
238 |
Q |
| |
|
|||||||| |||||| |||||||||| | |||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
20522636 |
aattaatcttcattgctgaaaggtatcaatttttacttacaaactgtacacaatttgtatgttatgtaggagaatatatttctcctttttctatctcatt |
20522735 |
T |
|
| Q |
239 |
ttgttcatctc |
249 |
Q |
| |
|
||||||||||| |
|
|
| T |
20522736 |
ttgttcatctc |
20522746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University