View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3964_high_3 (Length: 328)
Name: NF3964_high_3
Description: NF3964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3964_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 10665988 - 10666297
Alignment:
| Q |
17 |
acaattatatcacggtctatatcatagttgcgaaatttatttaataccttgactataaactcaacttgtaatttaaaactttaagggtttaatctttacc |
116 |
Q |
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| T |
10665988 |
acaattatatcacggtctatatcatagtcgtgaaatttatttaataccttgactattaactcaacttgtaatttaaaactttaagggtttaatctttacc |
10666087 |
T |
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| Q |
117 |
ttatcagcacattgatcatatccttttgtagcaagaattcgcctagggttaggatcaaaatattccaagagttttctatcatggttttcactctcagaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10666088 |
ttatcagcacattgatcatatccttttgtagcaagaattcgcctagggttaggatcaaaatattccaagagttttctatcatggttttcactctcagaat |
10666187 |
T |
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| Q |
217 |
tttcatcattagatgcagtttttgtttttggagtggaacaaggatgccaagttgatccaacttcttttgatatgcatattttggaaatataatcttggaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
10666188 |
tttcatcattagatgcagtttttgtttttggagtggaacaaggatgccaagttgatccaactttttctgatatgcatattttggaaatataatcttggaa |
10666287 |
T |
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| Q |
317 |
cacagttagg |
326 |
Q |
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|||||||||| |
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| T |
10666288 |
cacagttagg |
10666297 |
T |
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