View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3964_low_1 (Length: 355)
Name: NF3964_low_1
Description: NF3964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3964_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 46617586 - 46617915
Alignment:
| Q |
11 |
cagagaaccctgttttaattatctcaataacaagcgaatttgcaaacccttaaacaaataaatatcatcaaggctcaacaatagttctacaataaggaca |
110 |
Q |
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| T |
46617586 |
cagagaaccctgttttaattatctcaataacaagcgaatttgcaaacccttaaacaaataaatatcatcaaggctcaacaatagttctacaataaggaca |
46617685 |
T |
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| Q |
111 |
atgaggatgtgtttcaagccaagggagaagacatgctgaatgatacttatgtgagcaagaaagattcataacctcttcatcctgctgaaaatcttctaag |
210 |
Q |
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| T |
46617686 |
atgaggatgtgtttcaagccaagggagaagacatgctgaatgatacttatgtgagcaagaaagattcataacctcttcatcctgctgaaaatcttctaag |
46617785 |
T |
|
| Q |
211 |
cacacagcacaaatttttctctctttcttaaatttgttgccacgtaataaccatgaactttctagtaacttcctacctaatcctgcatctttcttttgga |
310 |
Q |
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| T |
46617786 |
cacacagcacaaatttttctctctttcttaaatttgttgccacgtaataaccatgaactttctagtaacttcctacctaatcctgcatctttcttttgga |
46617885 |
T |
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| Q |
311 |
attcttttccttcttttttgggattgtgtt |
340 |
Q |
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| T |
46617886 |
attcttttccttcttttttgggattgtgtt |
46617915 |
T |
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