View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_high_13 (Length: 250)
Name: NF3965_high_13
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45160456 - 45160694
Alignment:
| Q |
1 |
tattacatatttaccatttgtaataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggt |
100 |
Q |
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| T |
45160456 |
tattacatatttaccatttataataatttccttttgttgatacttgatattcacaggataacacaaaagaagttttgggttaccttattttaagcgaggt |
45160555 |
T |
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| Q |
101 |
aattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtattttggtaaatgaa |
200 |
Q |
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| T |
45160556 |
aattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtattttggtaaatgaa |
45160655 |
T |
|
| Q |
201 |
ctactannnnnnnngctatttcattctttacttttctgtg |
240 |
Q |
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| T |
45160656 |
ctactattttttta-ctatttcattctttacttttctgtg |
45160694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 24127792 - 24127611
Alignment:
| Q |
18 |
ttgtaataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttga |
117 |
Q |
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| T |
24127792 |
ttgtaataatttccttttgttgatacttgatattcacaggttaacaccaaagaagtcttgggttaccttattttaagtgagataattccactctgcttga |
24127693 |
T |
|
| Q |
118 |
gcaacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtattttggtaaatgaa |
200 |
Q |
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| T |
24127692 |
gcaacatggagatcggcaatgaaatatcaaaaactgttagtttctctattttta-ttttttaaagagtattttggtaaatgaa |
24127611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 8716779 - 8716608
Alignment:
| Q |
21 |
taataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagca |
120 |
Q |
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||||||||| ||||||||| ||||| ||||||||| | |||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8716779 |
taataattttcttttgttgttactttatattcacacgtcaacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagca |
8716680 |
T |
|
| Q |
121 |
acatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtattttggt |
193 |
Q |
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| T |
8716679 |
acatggaaatcggaaatgaaatattaaacaaagtgagtttctctatttttatttattt-aggagtattttggt |
8716608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 9068666 - 9068495
Alignment:
| Q |
21 |
taataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagca |
120 |
Q |
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| T |
9068666 |
taataattttcttttgttgttactttatattcacacgtcaacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagca |
9068567 |
T |
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| Q |
121 |
acatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtattttggt |
193 |
Q |
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||||||| |||||||||||||||| | | | || |||||||||||| |||||| ||| | |||||||||||| |
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| T |
9068566 |
acatggaaatcggaaatgaaatattaaacaaagtgagtttctctatttttatttattt-aggagtattttggt |
9068495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 8723114 - 8722946
Alignment:
| Q |
20 |
gtaataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagc |
119 |
Q |
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|||||||||||||||||||| ||||| | |||| || | | ||||||||||||||| ||||||||||||| ||| ||| ||||||||||| ||| |||| |
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| T |
8723114 |
gtaataatttccttttgttgttactttagattcgcaagtcagcaccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagc |
8723015 |
T |
|
| Q |
120 |
aacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtatttt |
190 |
Q |
| |
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| T |
8723014 |
aacatggaaatcggaaatgaaatatccaaaactgttagtttctctatt-tta-ttttttgaagagtatttt |
8722946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 9075001 - 9074833
Alignment:
| Q |
20 |
gtaataatttccttttgttgatacttgatattcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||| || | | ||||||||||||||| ||||||||||||| ||| ||| ||||||||||| ||| |||| |
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| T |
9075001 |
gtaataatttccttttgttgttactttagattcgcaagtcagcaccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagc |
9074902 |
T |
|
| Q |
120 |
aacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttatttttttaaagagtatttt |
190 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||| |
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| T |
9074901 |
aacatggaaatcggaaatgaaatatccaaaactgttagtttctctatt-tta-ttttttgaagagtatttt |
9074833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 16335818 - 16335703
Alignment:
| Q |
63 |
accaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttct |
162 |
Q |
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|||||||||||| | |||| |||| ||| ||| ||| |||||||||| ||| ||||||| | ||| |||||||| ||| ||| | ||| |||||| || | |
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| T |
16335818 |
accaaagaagttataggtttccttctttcaagtgagataattccattatgcatgagcaagaaggaaatcggaaaagaattattaaaaattgttagctttt |
16335719 |
T |
|
| Q |
163 |
ctattcttattttttt |
178 |
Q |
| |
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||||| |||| ||||| |
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| T |
16335718 |
ctattattatattttt |
16335703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 9519073 - 9519134
Alignment:
| Q |
118 |
gcaacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttattttttta |
179 |
Q |
| |
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|||| ||||| ||||| || ||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
9519073 |
gcaatatggaaatcggcaaagaattatccaaaactgttagtttctctattcttattgtttta |
9519134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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