View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_high_18 (Length: 237)
Name: NF3965_high_18
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_high_18 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 191368 - 191445
Alignment:
| Q |
41 |
aataatgaagtttgtttaattgttgtacctatgaaaaaacattaggcattgattcggtattaagaattagatctaagc |
118 |
Q |
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| T |
191368 |
aataatgaagtttgtttaattgttgtaccaatgaaaaaacattaggaattgatccggtattaagaattagatctaagc |
191445 |
T |
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Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 191515 - 191549
Alignment:
| Q |
188 |
tttagtataaatctcgaaattgagtgagaattttg |
222 |
Q |
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| T |
191515 |
tttagtataaatctcgaaattgagtgagaattttg |
191549 |
T |
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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 11818347 - 11818425
Alignment:
| Q |
40 |
gaataatgaagtttgtttaattgttgtacctatgaaaaaacattaggcattgattcggtattaagaattagatctaagc |
118 |
Q |
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| T |
11818347 |
gaataatgaagtttgtttaattgttgtaccaatgaaaaaacattaggaattgatccggtattaaaaattagatctaagc |
11818425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 11818495 - 11818529
Alignment:
| Q |
188 |
tttagtataaatctcgaaattgagtgagaattttg |
222 |
Q |
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| T |
11818495 |
tttagtataaatctcgaaattgagtgagaattttg |
11818529 |
T |
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Target: scaffold0316 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 6513 - 6582
Alignment:
| Q |
48 |
aagtttgtttaattgttgtacctatgaaaaaacattaggcattgattcggtattaagaattagatctaag |
117 |
Q |
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| T |
6513 |
aagtttgtttaattgttgtacctatgaaaaaatattagaaattgatccggtcttaagacttagatctaag |
6582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 11974439 - 11974370
Alignment:
| Q |
47 |
gaagtttgtttaattgttgtacctatgaaaaaacattaggcattgattcggtattaagaattagatctaag |
117 |
Q |
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| T |
11974439 |
gaagtttgtttaattgttgtacctatga-aaaatattagaaattgatccggtcttaagacttagatctaag |
11974370 |
T |
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