View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_high_20 (Length: 234)
Name: NF3965_high_20
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39823572 - 39823793
Alignment:
| Q |
1 |
atcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823572 |
atcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagca |
39823671 |
T |
|
| Q |
101 |
tttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39823672 |
tttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctg |
39823771 |
T |
|
| Q |
201 |
cttcataccattgcctttgctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
39823772 |
cttcataccattgcctttgctt |
39823793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 5617844 - 5617627
Alignment:
| Q |
2 |
tcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcat |
101 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| || || ||||| ||| | ||||||| || | || |||||||||| |||| |
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| T |
5617844 |
tcttctttcttcaatccccatccaactgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcat |
5617745 |
T |
|
| Q |
102 |
ttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctgc |
201 |
Q |
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||||||||| || ||||| ||| || ||| || |||||||| |||||||||| ||||||| ||||||||||| |||| |||||||||||| || || |
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| T |
5617744 |
ttctcattcgtttctcccacttggttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagc |
5617645 |
T |
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| Q |
202 |
ttcataccattgcctttg |
219 |
Q |
| |
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||| |||| |||||||| |
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| T |
5617644 |
ttcgcaccactgcctttg |
5617627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 21163131 - 21162914
Alignment:
| Q |
2 |
tcttctttcttcaatccccatccagcagcatgttcatcaagcatagctttcacctcaccaacacattcctcaccaaatccaatcccttgaaaattagcat |
101 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||| || || ||||| ||| | ||||||| || | || |||||||||| |||| |
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| T |
21163131 |
tcttctttcttcaatccccatccaactgcatgctcatcaagcatggccttaacctccaaaaccgaatcctcactgaaacaaaccccttgaaaacgtgcat |
21163032 |
T |
|
| Q |
102 |
ttctcattctttgttcccatttgcttataggttcaactctctcaactctttgaacaccttcatgagctatcacattttcaatcttccaacaaatatctgc |
201 |
Q |
| |
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||||||||| || ||||| ||| || ||| || |||||||| |||||||||| ||||||| ||||||||||| |||| |||||||||||| || || |
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| T |
21163031 |
ttctcattcgtttctcccacttggttttagactcgactctctcgactctttgaatcccttcatatgctatcacattctcaaccttccaacaaatttcagc |
21162932 |
T |
|
| Q |
202 |
ttcataccattgcctttg |
219 |
Q |
| |
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||| |||| |||||||| |
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| T |
21162931 |
ttcgcaccactgcctttg |
21162914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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