View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3965_high_5 (Length: 406)
Name: NF3965_high_5
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 8549097 - 8548689
Alignment:
| Q |
1 |
taaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatacacagttgaaaaaccaatgaagtcctcctcaaaccctcttatcactcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8549097 |
taaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatgcacagttgaaaaaccaatgaagtcctcctcaaaccctcttatcactcaaaa |
8548998 |
T |
|
| Q |
101 |
gtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtccacc-------ttt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
8548997 |
gtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtccaactttttttttt |
8548898 |
T |
|
| Q |
194 |
cnnnnnnnngaaagaactc-taagtccacctnnnnnnngtaatttacactctccattctannnnnnnnctaaatacctaacggttagactcacacactat |
292 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
8548897 |
tttttttttgaaagaactcttaagtccacctaaaaaaagtaatatacactctccattctatttttttcttaaatacctaatggttagactcacacactat |
8548798 |
T |
|
| Q |
293 |
aaatactgaaaagaggagaacttgaaattcgaactccgacctcctctatggcaatgttcatagagctgccattttagcacgcacttataaaacattctcg |
392 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8548797 |
aaatactgagaagaggagaacttgaaattcgaactccgacctcctctacggcaatgttcatagagctgccattttagcacgcacttataaaacactctcg |
8548698 |
T |
|
| Q |
393 |
attctatat |
401 |
Q |
| |
|
||||||||| |
|
|
| T |
8548697 |
attctatat |
8548689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University