View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3965_high_6 (Length: 384)

Name: NF3965_high_6
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3965_high_6
NF3965_high_6
[»] chr5 (10 HSPs)
chr5 (40-219)||(689856-690036)
chr5 (211-345)||(690051-690186)
chr5 (204-332)||(32090199-32090342)
chr5 (204-288)||(9507626-9507712)
chr5 (203-288)||(34854045-34854132)
chr5 (280-331)||(3627574-3627625)
chr5 (280-330)||(9503735-9503785)
chr5 (280-330)||(9507717-9507767)
chr5 (293-331)||(34854155-34854193)
chr5 (201-288)||(9503641-9503730)
[»] chr8 (8 HSPs)
chr8 (149-374)||(37186744-37186985)
chr8 (201-374)||(37786537-37786725)
chr8 (144-223)||(37786745-37786825)
chr8 (302-374)||(37791062-37791134)
chr8 (144-223)||(37791301-37791381)
chr8 (201-288)||(37791207-37791295)
chr8 (280-330)||(11096211-11096261)
chr8 (216-270)||(11096134-11096186)
[»] chr1 (1 HSPs)
chr1 (140-374)||(44541314-44541579)
[»] chr3 (9 HSPs)
chr3 (144-349)||(28920251-28920472)
chr3 (144-223)||(18641093-18641173)
chr3 (201-288)||(4315552-4315641)
chr3 (217-330)||(531527-531655)
chr3 (216-288)||(32813593-32813667)
chr3 (216-271)||(55418423-55418478)
chr3 (280-319)||(4315646-4315685)
chr3 (280-332)||(47743902-47743954)
chr3 (286-330)||(55418479-55418523)
[»] chr2 (13 HSPs)
chr2 (203-373)||(302372-302556)
chr2 (201-374)||(295734-295922)
chr2 (203-331)||(29960346-29960476)
chr2 (201-330)||(13273295-13273419)
chr2 (144-223)||(302270-302350)
chr2 (201-331)||(45485784-45485929)
chr2 (201-288)||(21794542-21794631)
chr2 (143-221)||(29960257-29960336)
chr2 (201-288)||(18163923-18164012)
chr2 (201-288)||(43081689-43081778)
chr2 (280-331)||(39190646-39190697)
chr2 (280-330)||(18164017-18164067)
chr2 (150-212)||(295654-295717)
[»] chr7 (6 HSPs)
chr7 (144-288)||(297006-297153)
chr7 (144-288)||(45937770-45937917)
chr7 (144-288)||(293112-293260)
chr7 (280-331)||(22582334-22582385)
chr7 (280-318)||(45937922-45937960)
chr7 (281-318)||(293266-293303)
[»] scaffold0038 (2 HSPs)
scaffold0038 (211-337)||(49381-49522)
scaffold0038 (144-226)||(49254-49337)
[»] chr6 (6 HSPs)
chr6 (211-337)||(28249219-28249360)
chr6 (201-288)||(31888483-31888572)
chr6 (144-226)||(28249092-28249175)
chr6 (216-288)||(7501421-7501495)
chr6 (280-330)||(31888577-31888627)
chr6 (280-339)||(7501356-7501416)
[»] chr4 (11 HSPs)
chr4 (144-223)||(5707100-5707180)
chr4 (201-288)||(53011149-53011238)
chr4 (201-271)||(56563179-56563249)
chr4 (203-331)||(50935647-50935785)
chr4 (280-331)||(5715377-5715428)
chr4 (201-271)||(53008257-53008327)
chr4 (226-288)||(16854014-16854078)
chr4 (201-328)||(50911862-50912000)
chr4 (143-193)||(50911740-50911790)
chr4 (280-315)||(53008351-53008386)
chr4 (144-193)||(50935538-50935587)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 40 - 219
Target Start/End: Original strand, 689856 - 690036
Alignment:
Q  40 cactgcattttttaatcatcataaaaacagcnnnnnnnncc-ctcataataattgcccgagggagtacacttatacatgcagaagctaaagttgaaacta 138  Q
    |||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  689856 cactgcattttttaatcatcataaaaacagctttttttttttctcataataattgcccgagggagtacacttatacatgcagaagctaaagttgaaacta 689955  T
Q  139 aaaattattggaatattaatcaataattgttgttcagaatctgaagtgcagcttcaaacatgagcttctgaagtgctgctt 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  689956 aaaattattggaatattaatcaataactgttgttcagaatctgaagtgcagcttcgaacatgagcttctgaagtgctgctt 690036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 211 - 345
Target Start/End: Original strand, 690051 - 690186
Alignment:
Q  211 gtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaacagg-tagttagtttgttacaacgttcagttgtatatata 309  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  690051 gtgcagcttttgatgtcttcagaagtagagtttagtaaccaatcttggttagcgtgttaacagggtagttagtttgttacaatgttcagttgtatatata 690150  T
Q  310 ctcactcatgtgctgtaaataataacaattattaat 345  Q
    |||||||||||| |||||||||||||||||||||||    
T  690151 ctcactcatgtgttgtaaataataacaattattaat 690186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 32090199 - 32090342
Alignment:
Q  204 ttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttgtta 288  Q
    ||||||||| | |||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||  | ||||||             |||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  289 caacgttcagttgtatatatactcactcatgtgctgtaaataat 332  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  32090299 caacgtccagttgtatatatactcactcatgtgttgtaaataat 32090342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 9507626 - 9507712
Alignment:
Q  204 ttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||||| |  ||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||  |||||||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 9507712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 34854045 - 34854132
Alignment:
Q  203 cttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||| |||| |||| ||||||||||||||| ||||| ||||||  ||| |||||||||||||||||  ||||||||| |||||||    
T  34854045 cttctgatgtgcagcttttgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgtta 34854132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 3627574 - 3627625
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  3627574 agtttgttacaacgtccagatgtatatatactcactcatgtgttgtaaataa 3627625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 9503735 - 9503785
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||||||||||| ||||| |||||||||||||||||||| ||||||||    
T  9503735 agtttgttacaacgtccagttatatatatactcactcatgtgttgtaaata 9503785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 9507717 - 9507767
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||||||||||| ||||| ||||||||| |||||||||| ||||||||    
T  9507717 agtttgttacaacgtccagttatatatatacccactcatgtgttgtaaata 9507767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 34854155 - 34854193
Alignment:
Q  293 gttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  34854155 gttcagttgtatatatactcactcatgtgttgtaaataa 34854193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 9503641 - 9503730
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaa--caggtagttagtttgtta 288  Q
    |||||||||||| |   |||||| ||||||||||| ||||| ||||||  ||| ||||||||||||||||   || ||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgtta 9503730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 149 - 374
Target Start/End: Complemental strand, 37186985 - 37186744
Alignment:
Q  149 gaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctgatgtcttcagaagtagagtttagta 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||| ||||| |||||    
T  37186985 gaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctgatgtctttagaagcagagtctagta 37186886  T
Q  248 accaaccttggttagcgtgttaac--aggtagtt-------------agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataat 332  Q
    |  ||| |||| ||  ||||||||   |||||||             |||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  37186885 ataaacattggctatagtgttaaccagggtagttagtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataat 37186786  T
Q  333 aacaattattaatcaatttttcagtttatcacaatttctctg 374  Q
    |||||| | |||||| ||||| ||||| ||||||||||||||    
T  37186785 aacaatcaataatcatttttttagtttttcacaatttctctg 37186744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 201 - 374
Target Start/End: Complemental strand, 37786725 - 37786537
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaaca--ggtagttagtttgtta---------- 288  Q
    ||||||||| |||| |||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||   ||||||||||||||||              
T  37786725 agcttctgatgtgcagcttttgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttg 37786626  T
Q  289 ---caacgttcagttgtatatatactcactcatgtgctgtaaataataacaattattaatcaatttttcagtttatcacaatttctctg 374  Q
       |||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  37786625 ttacaacgtccagttgtatatatattcactcatgtgttgtaaataataacaatcattaatcaatttttcagtttatcataatttctctg 37786537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 37786825 - 37786745
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga 223  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||| |||||||||    
T  37786825 tattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctga 37786745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 37791134 - 37791062
Alignment:
Q  302 tatatatactcactcatgtgctgtaaataataacaattattaatcaatttttcagtttatcacaatttctctg 374  Q
    |||||||| ||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37791134 tatatatattcactgatgtgttgtacataataacaattattaatcaatttttcagtttatcacaatttctctg 37791062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 37791381 - 37791301
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga 223  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| ||||  |||||||||||||||||||||| ||||||    
T  37791381 tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctga 37791301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 37791295 - 37791207
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||  |||||||||||||||||    
T  37791295 agcttctgatgtgcagcttctgatgtcttcagaagcagag-ttagtaaccaaccttgattagcatgttaaccaaggtagttagtttgtta 37791207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 11096211 - 11096261
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11096211 agtttgttacaacgttcagttgtatatatactcactcatgtgttgtaaata 11096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 11096134 - 11096186
Alignment:
Q  216 gcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaa 270  Q
    ||||||||||||||||||||  |||| ||||||| ||| ||||||||||||||||    
T  11096134 gcttctgatgtcttcagaag--gagtctagtaacaaactttggttagcgtgttaa 11096186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 140 - 374
Target Start/End: Complemental strand, 44541579 - 44541314
Alignment:
Q  140 aaattattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga--------------t 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||              |    
T  44541579 aaattattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgtgcagcttctgtt 44541480  T
Q  225 gtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttgttacaacgttcagttgtatatata 309  Q
    ||||||||||| | ||| || |||||||||||| |||| ||||||||   |||||||             |||||||||||| || ||||||||||||||    
T  44541479 gtcttcagaagcatagtctaataaccaaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgtatatata 44541380  T
Q  310 ctcactcatgtgctgtaaat-aataacaattattaatcaatttttcagtttatcacaatttctctg 374  Q
    |||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||    
T  44541379 ctcactcatgtgttgtaaataaaaaacaattattaatcaattgttcagtttatcacaatttctctg 44541314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 144 - 349
Target Start/End: Complemental strand, 28920472 - 28920251
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctgatgtcttcagaagtagagtt 242  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||| |||| |||||| |||||||||||||||||||| | |||     
T  28920472 tattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctgatgtcttcagaagcatagtc 28920373  T
Q  243 tagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaa 327  Q
    |||||| ||| |||||||||| |||||||   |||||||             ||||||||| ||||| ||||||||||||||||||||||| || |||||    
T  28920372 tagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgttataacgtccagttgtatatatactcactcatatgttgtaa 28920273  T
Q  328 ataataacaattattaatcaat 349  Q
    ||||||||||| ||| ||||||    
T  28920272 ataataacaatcattgatcaat 28920251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 18641173 - 18641093
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| || ||||||||    
T  18641173 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 18641093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 4315552 - 4315641
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||||||||||||| |||||||||| ||||||||| ||||| ||||||| ||| |||||||||||||||||  |||||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgtta 4315641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 531655 - 531527
Alignment:
Q  217 cttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaaca--ggtagttagttt-------------gttacaacgttcagttg 301  Q
    ||||||||||||||||||| ||||| ||||||  ||||||||||||||||||||||  ||||||||||||             |||||||||| ||||||    
T  531655 cttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttgttacaacgtccagttg 531556  T
Q  302 tatatatactcactcatgtgctgtaaata 330  Q
    |||||||||||||||||||| ||||||||    
T  531555 tatatatactcactcatgtgttgtaaata 531527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 32813593 - 32813667
Alignment:
Q  216 gcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||| ||||||||| ||||| ||| | ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  32813593 gcttttgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgtta 32813667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 55418423 - 55418478
Alignment:
Q  216 gcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac 271  Q
    |||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||    
T  55418423 gcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaac 55418478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 4315646 - 4315685
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatg 319  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  4315646 agtttgttacaacgtccagttgtatatatactcactcatg 4315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 47743902 - 47743954
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataat 332  Q
    |||||||||||||||  ||||||| ||||| ||||||||||| ||||||||||    
T  47743902 agtttgttacaacgtctagttgtaaatatattcactcatgtgttgtaaataat 47743954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 55418479 - 55418523
Alignment:
Q  286 ttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||| | |||||||||||||||||||||||||  ||||||||    
T  55418479 ttacaacttccagttgtatatatactcactcatgtattgtaaata 55418523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 373
Target Start/End: Original strand, 302372 - 302556
Alignment:
Q  203 cttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaaca--ggtagttagtttgtta------------ 288  Q
    ||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||   ||||||||||||||||                
T  302372 cttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgtt 302471  T
Q  289 -caacgttcagttgtatatatactcactcatgtgctgtaaataataacaattattaatcaatttttcagtttatcacaatttctct 373  Q
     ||| || |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  302472 acaatgtccagttgtatatatactcact-atgtgttgtaaataataacaatcattaatcaatttttcagtttatcacaatttctct 302556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 201 - 374
Target Start/End: Original strand, 295734 - 295922
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac------aggtagtt---------agtttg 285  Q
    ||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||      || |||||         ||||||    
T  295734 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagtttg 295833  T
Q  286 ttacaacgttcagttgtatatatactcactcatgtgctgtaaataataacaattattaatcaatttttcagtttatcacaatttctctg 374  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  295834 ttacaatgtccagttgtatatatactcactcatgtgttgtaaataataacaatcattaatcaatttttcagtttatcataatttctctg 295922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 203 - 331
Target Start/End: Original strand, 29960346 - 29960476
Alignment:
Q  203 cttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgttacaacgttcagtt 300  Q
    ||||||||| || |||| ||||||||||||||| || || ||||||| |||||||||||||||||||||  |||||||||||||||||||||||  ||||    
T  29960346 cttctgaagggcagcttatgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttacaacgtctagtt 29960445  T
Q  301 gtatatatactcactcatgtgctgtaaataa 331  Q
    ||||||||||||||| ||||| |||||||||    
T  29960446 gtatatatactcacttatgtgttgtaaataa 29960476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 13273295 - 13273419
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgttacaacgttcag 298  Q
    |||||||||||||| ||||||    |||||||||| ||||| ||||||| |||||||||||||||||||||  ||||||||||||||||   |||| |||    
T  13273295 agcttctgaagtgcagcttct----tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtt---acgtccag 13273387  T
Q  299 ttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||||||| ||||||||||| ||||||||    
T  13273388 ttgtatatatattcactcatgtgttgtaaata 13273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 302270 - 302350
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga 223  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  302270 tattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctga 302350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 45485929 - 45485784
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttg 285  Q
    |||||||||||||| |||||||||||||||||||  ||||| ||| ||| |||||||||||||||||||||  ||||||||             ||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  286 ttacaacgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||    
T  45485829 ttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 45485784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 21794631 - 21794542
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||||| |||| |||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  21794631 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgttaaccaaggtagttagtttgtta 21794542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 29960257 - 29960336
Alignment:
Q  143 ttattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttct 221  Q
    |||||||||||||||||||||| ||||||| ||||| || |||||||||||  |||||||||||||||||||||||||||    
T  29960257 ttattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttct 29960336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 18163923 - 18164012
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||  | | |||||||||||||||||  |||||||||||||||||    
T  18163923 agcttctgaaatgctgcttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgtta 18164012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 43081778 - 43081689
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||||| |||| |||||||||||||||||||| ||||| ||||||  ||| ||||||||| |||||||  |||||||||||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgtta 43081689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 39190697 - 39190646
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  39190697 agtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataa 39190646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 18164017 - 18164067
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||||||    
T  18164017 agtttgttacaacgtccagttgtatatatactcactcaagtgttgtaaata 18164067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 295654 - 295717
Alignment:
Q  150 aatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagt 212  Q
    |||||||||| |||| ||||||| ||||| ||||||||||||||  ||||||||||||||||||    
T  295654 aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagcttctgaagt 295717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 297006 - 297153
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttca-aacatgagcttctgaagtgctgcttctgatgtcttcagaagtagagtt 242  Q
    |||| |||||||||||||||| ||||||||||  ||||||||| ||||||  ||||| | ||||||| |||| |||||||||||||||||||   |||||    
T  297006 tattagaatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctgatgtcttcagaaactgagtt 297105  T
Q  243 tagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  297106 tagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 297153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 45937770 - 45937917
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttca-aacatgagcttctgaagtgctgcttctgatgtcttcagaagtagagtt 242  Q
    |||| |||||||||||||||| |||||||||||||||| |||||| |||   |||||||||||||||||||| |||| ||||||||||| ||| || ||     
T  45937770 tattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaacatgagcttctgaagtgcagcttttgatgtcttcaaaagcagggtc 45937869  T
Q  243 tagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||  |||||||||||||||||||||  |||||||||||| ||||    
T  45937870 tagtaataaaccttggttagcgtgttaaccaaggtagttagttagtta 45937917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 288
Target Start/End: Original strand, 293112 - 293260
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttca-aacatga-gcttctgaagtgctgcttctgatgtcttcagaagtagagt 241  Q
    |||| |||||||||||||||| ||||||||||  ||||||||||||||||  |||| || |||| ||| |||  |||| ||||||||||||||   ||||    
T  293112 tattagaatattaatcaataactgttgttcagcttctgaagtgcagcttctgaacaagaagcttttgatgtgtagcttttgatgtcttcagaaactgagt 293211  T
Q  242 ttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||||||| ||| |||||||||||||||||  |||||||||||||||||    
T  293212 ttagtaacaaacattggttagcgtgttaaccaaggtagttagtttgtta 293260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 22582385 - 22582334
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  22582385 agtttggtacaacgtccagttgtatatatactcactcatgtgttgtaaataa 22582334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 45937922 - 45937960
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcat 318  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  45937922 agtttgttacaacgtccagttgtatatatactcactcat 45937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 293266 - 293303
Alignment:
Q  281 gtttgttacaacgttcagttgtatatatactcactcat 318  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  293266 gtttgttacaacgtctagttgtatatatactcactcat 293303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 49381 - 49522
Alignment:
Q  211 gtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttgttacaacgtt 295  Q
    ||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||  ||||||||             |||||||||||||||     
T  49381 gtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtc 49480  T
Q  296 cagttgtatatatactcactcatgtgctgtaaataataacaa 337  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  49481 tagttgtatatatactcactcatgtgttgtaaataataacaa 49522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 49254 - 49337
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctgatgt 226  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||   |||||||||||    
T  49254 tattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 49337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 211 - 337
Target Start/End: Original strand, 28249219 - 28249360
Alignment:
Q  211 gtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt-------------agtttgttacaacgtt 295  Q
    ||||||||||||||||||||||||| || || ||||||| |||||||||||||||||||||  ||||||||             |||||||||||||||     
T  28249219 gtgctgcttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtc 28249318  T
Q  296 cagttgtatatatactcactcatgtgctgtaaataataacaa 337  Q
     ||||||||||||||||||||||||| |||||||||||||||    
T  28249319 tagttgtatatatactcactcatgtgttgtaaataataacaa 28249360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 31888483 - 31888572
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||| |||||| |||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||  |||||||||||||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgtta 31888572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 28249092 - 28249175
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctgatgt 226  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||   |||||||||||    
T  28249092 tattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaagtatagcttctgatgt 28249175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 7501495 - 7501421
Alignment:
Q  216 gcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||  || ||||||||||||||    
T  7501495 gcttctgatgtcttcacaagcagagtctagtaacaaaccttggttagcgtgttaaccaagatagttagtttgtta 7501421  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 31888577 - 31888627
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata 330  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||||    
T  31888577 agtttgttacaacgtgcaattgtatatatactcactcatgtgttgtaaata 31888627  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 7501416 - 7501356
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaata-ataacaatt 339  Q
    ||||||||||||||  ||||||| |||||||||||||||||| |||||||| |||||||||    
T  7501416 agtttgttacaacgcccagttgtttatatactcactcatgtgttgtaaatagataacaatt 7501356  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 5707100 - 5707180
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc-aaacatgagcttctgaagtgctgcttctga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| || ||||||||    
T  5707100 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 5707180  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 53011149 - 53011238
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    ||||||||| |||| |||| ||||||||||||||| ||||| ||||||| ||| |||||||||||||||||  |||||||||||||||||    
T  53011149 agcttctgatgtgcagcttatgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgtta 53011238  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 56563179 - 56563249
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac 271  Q
    ||||| |||||||| |||||||||||||||||||| ||||| || |||| |||||||||||||||||||||    
T  56563179 agcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaac 56563249  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 331
Target Start/End: Original strand, 50935647 - 50935785
Alignment:
Q  203 cttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagtt---------agtttgttacaa 291  Q
    ||||||| |||| | || |||||||||||||||| |||| |||||| ||| ||||||||||||||||||  ||||||||         ||||||||||||    
T  50935647 cttctgatgtgcagattatgatgtcttcagaagttgagtctagtaa-caaacttggttagcgtgttaaccaaggtagttagttagaggagtttgttacaa 50935745  T
Q  292 cgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    | |  ||||||||||||||||||||||||| |||||||||    
T  50935746 catctagttgtatatatactcactcatgtgttgtaaataa 50935785  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 5715377 - 5715428
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcactcatgtgctgtaaataa 331  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  5715377 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 5715428  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 271
Target Start/End: Original strand, 53008257 - 53008327
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac 271  Q
    |||||||||||| | |||||||||||||||||||| ||||| ||||||| ||| ||||||||||| |||||    
T  53008257 agcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaac 53008327  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 16854078 - 16854014
Alignment:
Q  226 tcttcagaagtagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtttgtta 288  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||  | |||||||||||||||    
T  16854078 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaacgtagttagtttgtta 16854014  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 50911862 - 50912000
Alignment:
Q  201 agcttctgaagtgctgcttctgatgtcttcagaag-tagagtttagtaaccaaccttggttagcgtgttaac--aggtagttagtt---------tgtta 288  Q
    ||||||||| |||| | |||||||||||||||||| | |||| ||||||| ||| ||||||||||| |||||  ||||||||||||         |||||    
T  50911862 agcttctgatgtgcagattctgatgtcttcagaagcttgagtctagtaacaaac-ttggttagcgtattaaccaaggtagttagttagaggagtttgtta 50911960  T
Q  289 caacgttcagttgtatatatactcactcatgtgctgtaaa 328  Q
    ||||   |||||||||||||||||||||||||| ||||||    
T  50911961 caacacccagttgtatatatactcactcatgtgttgtaaa 50912000  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 50911740 - 50911790
Alignment:
Q  143 ttattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc 193  Q
    ||||| |||||||||||||||| |||||||||||| ||| |||||||||||    
T  50911740 ttattagaatattaatcaataactgttgttcagaagctggagtgcagcttc 50911790  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 315
Target Start/End: Original strand, 53008351 - 53008386
Alignment:
Q  280 agtttgttacaacgttcagttgtatatatactcact 315  Q
    ||||||||||||||| ||||||||||||||||||||    
T  53008351 agtttgttacaacgtccagttgtatatatactcact 53008386  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 50935538 - 50935587
Alignment:
Q  144 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttc 193  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||| ||||    
T  50935538 tattagaatattaatcaataactgttgttcagaagctggagtgcaacttc 50935587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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