View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_10 (Length: 313)
Name: NF3965_low_10
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 38567054 - 38567337
Alignment:
| Q |
21 |
attgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttg |
120 |
Q |
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| T |
38567054 |
attgtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttg |
38567153 |
T |
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| Q |
121 |
ccggataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctcatttt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38567154 |
ccggataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctcctttt |
38567253 |
T |
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| Q |
221 |
cattgtctcaaacattctgtaagccgccgcctgacctgccgcaacagcactcaaaccagatgatgcctggccaagagccctaaa |
304 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
38567254 |
aattgtctcaaacattttgtaagccgccgcccgacctgccgcaaaagcactcaaaccagatgatgcctggccaagagacctaaa |
38567337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 27 - 304
Target Start/End: Original strand, 38525935 - 38526212
Alignment:
| Q |
27 |
gactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggat |
126 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38525935 |
gactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggat |
38526034 |
T |
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| Q |
127 |
aactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctcattttcattgt |
226 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
38526035 |
aactgaaataaacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgt |
38526134 |
T |
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| Q |
227 |
ctcaaacattctgtaagccgccgcctgacctgccgcaacagcactcaaaccagatgatgcctggccaagagccctaaa |
304 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| |||||||| || | ||||||||||||||||| |||||| |
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| T |
38526135 |
ctcaaacattttgtaagccgccgcctgacccgccgcaaaagcactcatacttggtgatgcctggccaagagacctaaa |
38526212 |
T |
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