View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_11 (Length: 308)
Name: NF3965_low_11
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 22362822 - 22363114
Alignment:
| Q |
1 |
aaattgaagaatgttagaaaaacatggtaacaagttaacataaagtggataatatgtaagtgaaacatgtgaaattatagatgcatatatgtacctgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22362822 |
aaattgaagaatgttagaaaaacatggtaacaagataacataaagtggataatatgtgagtgaaacatgtgaaattatagaagcatatatgtacctgaaa |
22362921 |
T |
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| Q |
101 |
agtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaatacagtacctgctggaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362922 |
agtatcacctaaacttgtagaggggtcaaaactgcatatgacatgaagtctctgaccttcacctatattcactaaataaaatacagtacctgctggaatt |
22363021 |
T |
|
| Q |
201 |
acatacaaatcccccgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccctgcatccaagttgaaaatt |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363022 |
acatacaaatcccctgtctttattctcctttcctctagttcatctccatatatgaatcccaactttgctacccctgcatccaagttgaaaatt |
22363114 |
T |
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