View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_12 (Length: 262)
Name: NF3965_low_12
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2447022 - 2446869
Alignment:
| Q |
1 |
ctttttcaaatgttgtcgtacctttgaacttttgatttgggccaaacttttgaaaagattgagtcatgtgttgaccaccttttggagctttcttgtacca |
100 |
Q |
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| T |
2447022 |
ctttttcaaatgttgtcgtacctttgaacttttgatttgggccaaacttttgaaaagattgagtcttgtgttgaccaccttttggagctttcttgtacca |
2446923 |
T |
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| Q |
101 |
ctgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
154 |
Q |
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| T |
2446922 |
ctgatcagttgaaacattttaaggaggaacataatttatcttcaaatgtggagg |
2446869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 2446844 - 2446738
Alignment:
| Q |
152 |
aggccaacaagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcaccc-tcttcatttcctctttgtccctt |
250 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |
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| T |
2446844 |
aggcaaacaagcattttgttggtaagaaggccaagactggcccttacaacttacaacattggtttgtgcttcacccttcttcatttcctttttgtctctt |
2446745 |
T |
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| Q |
251 |
tgcttct |
257 |
Q |
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||||||| |
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| T |
2446744 |
tgcttct |
2446738 |
T |
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