View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3965_low_18 (Length: 237)

Name: NF3965_low_18
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3965_low_18
NF3965_low_18
[»] chr4 (5 HSPs)
chr4 (47-180)||(34542385-34542518)
chr4 (83-199)||(23564540-23564660)
chr4 (93-196)||(36165447-36165554)
chr4 (83-156)||(11784995-11785068)
chr4 (83-156)||(53089807-53089880)
[»] chr7 (1 HSPs)
chr7 (83-157)||(8745899-8745973)
[»] chr5 (2 HSPs)
chr5 (83-153)||(42042269-42042339)
chr5 (119-153)||(6423984-6424018)
[»] scaffold1432 (1 HSPs)
scaffold1432 (118-188)||(936-1010)
[»] chr2 (2 HSPs)
chr2 (93-160)||(43829631-43829699)
chr2 (93-160)||(43829846-43829913)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 180
Target Start/End: Complemental strand, 34542518 - 34542385
Alignment:
Q  47 ggttcataaaacatgttgaagttgattttgaagttatttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtat 146  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  34542518 ggttcataaaacatgttgaagttgattttgaagttgtttgttgtttgtcccacattatccagtttcccagaccgttgagtgtataaatatgtttgagtat 34542419  T
Q  147 catcatcctttgagattttgggatgagatacaag 180  Q
    ||||||||||||||||||||||||||||||||||    
T  34542418 catcatcctttgagattttgggatgagatacaag 34542385  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 23564660 - 23564540
Alignment:
Q  83 tttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctttgag----attttgggatgagataca 178  Q
    |||||| ||||||  ||||||||||| ||||| || | ||||||||  || |||| ||||||| | ||||||||||||     |||||||||||||| ||    
T  23564660 tttgttatttgtcttacattgtccaggttcccggactattgagtgtgcaagtatgcttgagtaccctcatcctttgagctaacttttgggatgagatcca 23564561  T
Q  179 agtctatttatcatggtatca 199  Q
    |  ||||||| ||||||||||    
T  23564560 aacctatttaacatggtatca 23564540  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 36165554 - 36165447
Alignment:
Q  93 gtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctttg----agattttgggatgagatacaagtctattta 188  Q
    |||||||||||   || ||||| | |||||||||||| ||| ||||||||||| | ||||| ||||    ||||||||||||||||| |||| | |||||    
T  36165554 gtcccacattgctaaggttcccgggttgttgagtgtataaagatgtttgagtaccctcatcttttgtgctagattttgggatgagatccaagcccattta 36165455  T
Q  189 tcatggta 196  Q
     |||||||    
T  36165454 ccatggta 36165447  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 11784995 - 11785068
Alignment:
Q  83 tttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctt 156  Q
    ||||||||| ||||||||||   ||| ||| | || ||||||||||| ||||||||||||||| | ||||||||    
T  11784995 tttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatcctt 11785068  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 53089880 - 53089807
Alignment:
Q  83 tttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctt 156  Q
    ||||||||| ||||||| ||   ||| |||||||| |||| |||||| ||||||||||||||| | ||||||||    
T  53089880 tttgttgttagtcccactttactcaggttcccagactgttaagtgtataaatatgtttgagtaccctcatcctt 53089807  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 8745973 - 8745899
Alignment:
Q  83 tttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatccttt 157  Q
    |||||| | ||||| ||||||| ||| ||||| || ||||||||||| ||||||||| ||||||| |||||||||    
T  8745973 tttgttatgtgtcctacattgtacaggttcccggactgttgagtgtataaatatgttcgagtatcctcatccttt 8745899  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 42042269 - 42042339
Alignment:
Q  83 tttgttgtttgtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatc 153  Q
    ||||||||| ||| |||||||   || |||||||| ||||||||||| ||||||||||||||||| |||||    
T  42042269 tttgttgttagtcacacattgcaaaggttcccagactgttgagtgtataaatatgtttgagtatcttcatc 42042339  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 6423984 - 6424018
Alignment:
Q  119 tgttgagtgtaaaaatatgtttgagtatcatcatc 153  Q
    ||||||||||| |||||||||||||||||||||||    
T  6423984 tgttgagtgtataaatatgtttgagtatcatcatc 6424018  T

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Target: scaffold1432 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 1010 - 936
Alignment:
Q  118 ttgttgagtgtaaaaatatgtttgagtatcatcatcctttgaga----ttttgggatgagatacaagtctattta 188  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||     ||||||||||||||  |||||||||||    
T  1010 ttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctattta 936  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 43829699 - 43829631
Alignment:
Q  93 gtcccacattgtccagt-ttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctttgag 160  Q
    |||||||||||| |||  ||||| || ||||||||||| ||||||||||||||||| |||| |||||||    
T  43829699 gtcccacattgttcaggattcccggactgttgagtgtataaatatgtttgagtatcctcattctttgag 43829631  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 43829913 - 43829846
Alignment:
Q  93 gtcccacattgtccagtttcccagattgttgagtgtaaaaatatgtttgagtatcatcatcctttgag 160  Q
    |||||||||||  ||| ||||||||| |||||||||| ||||||| ||||||| | |||||| |||||    
T  43829913 gtcccacattgctcaggttcccagatcgttgagtgtagaaatatgcttgagtaccctcatccattgag 43829846  T

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