View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_2 (Length: 538)
Name: NF3965_low_2
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 146 - 522
Target Start/End: Complemental strand, 2724984 - 2724607
Alignment:
| Q |
146 |
ggattatactcattttatacactaaagtgaattgttcactttggagaagtgagatccattaatagtgatgtgtaaatatgtttcgaagtcttggggagtg |
245 |
Q |
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| T |
2724984 |
ggattatactcattttatacactaaagtgaattgttcactttggagaagtgagatccattaatagtgatgtgtacatatgtttcgaagtcttggggagtg |
2724885 |
T |
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| Q |
246 |
tcgggagcaacaacaaggctaatgattgaacacgccaagaactttgacaccacatatccacgcaaaaccttatagcattgggaatataggtaaatccaac |
345 |
Q |
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| T |
2724884 |
tcgggagcaacaacacggctaatgattgaacacgccaagaactttgacaccacatatccacgcaaaaccttatagcattgggaatataggtaaatccaac |
2724785 |
T |
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| Q |
346 |
atcgaactcattcatccgtagtcgatgtgagact-aatcactcacacgacaactaaacaacatacttaggtaaatcccaaaacaaagaaaaaggaaggaa |
444 |
Q |
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| T |
2724784 |
atcgaactcattcatccgtagtcgatgtgagactaaatcactcacacgacaactaaacaacatacttaggtaaatcccaaaacaaagaaaaaggaaggaa |
2724685 |
T |
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| Q |
445 |
gttaactgtaattacccatacaatgagaattccacgctgtctagcaatttccacagccttgatcacatttgggacaac |
522 |
Q |
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| T |
2724684 |
gttaacagtaattacccaaacaatgagaattccacgctgtctagcaatttccacagccttgatcacatttgggacaac |
2724607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 2725462 - 2725331
Alignment:
| Q |
12 |
agagaggttaatatttcaaccgtttaatcatttgttatacatgtgcatagtca-ttgcttataatactcactttacagtctattttatacacatgacacc |
110 |
Q |
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| T |
2725462 |
agagaggttaatatttcaaccgtttaatgatttgttatacatgtgcatagtcaattgcttataatactcactttacagtctattttatacacatgacacc |
2725363 |
T |
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| Q |
111 |
gacatgccttcaatctgaagtgtttgtgctat |
142 |
Q |
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| T |
2725362 |
gccatgccttcaatctgatgtgtttgtgctat |
2725331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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