View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3965_low_26 (Length: 206)

Name: NF3965_low_26
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3965_low_26
NF3965_low_26
[»] chr8 (1 HSPs)
chr8 (1-184)||(29270384-29270567)
[»] scaffold0349 (1 HSPs)
scaffold0349 (13-187)||(16680-16852)
[»] chr6 (21 HSPs)
chr6 (13-187)||(27715092-27715264)
chr6 (1-157)||(27682419-27682575)
chr6 (1-149)||(27703413-27703567)
chr6 (59-139)||(26852086-26852166)
chr6 (66-139)||(26650051-26650124)
chr6 (66-139)||(26756019-26756092)
chr6 (66-139)||(28782487-28782560)
chr6 (66-139)||(28789861-28789934)
chr6 (60-135)||(25486821-25486898)
chr6 (66-139)||(26626660-26626733)
chr6 (66-139)||(26732637-26732710)
chr6 (60-135)||(25548422-25548497)
chr6 (72-139)||(28795879-28795946)
chr6 (60-139)||(27078781-27078861)
chr6 (65-139)||(26953131-26953205)
chr6 (60-113)||(26146443-26146496)
chr6 (153-187)||(27695297-27695331)
chr6 (60-101)||(26059392-26059433)
chr6 (60-101)||(26079362-26079403)
chr6 (70-135)||(26638921-26638986)
chr6 (70-135)||(26744887-26744952)
[»] scaffold0419 (1 HSPs)
scaffold0419 (66-139)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (66-139)||(10265-10338)
scaffold0277 (66-139)||(1305-1378)
[»] chr4 (5 HSPs)
chr4 (66-135)||(18652126-18652195)
chr4 (66-135)||(18676184-18676253)
chr4 (66-135)||(18686224-18686293)
chr4 (66-135)||(18720714-18720783)
chr4 (66-135)||(18728150-18728219)
[»] chr1 (1 HSPs)
chr1 (66-139)||(26139534-26139607)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29270384 - 29270567
Alignment:
Q  1 cccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29270384 cccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttg 29270483  T
Q  101 cttttttagaggaggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattctcctc 184  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  29270484 cttttttagaggaggcacaaattgtgataatgaagtattattgctataattgagataaggatctgtgaataccacattctcctc 29270567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 16852 - 16680
Alignment:
Q  13 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagg 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16852 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 16753  T
Q  113 aggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattctcctcctc 187  Q
    |||| |||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||    
T  16752 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 16680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 27715092 - 27715264
Alignment:
Q  13 tttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagg 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27715092 tttgttcctctttcgtcaaatcctgctgttgcaatgaagcattgatatcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagagg 27715191  T
Q  113 aggcacaaattgtgacaatgaagtattatttctataattgagataaggatctttgaataccacattctcctcctc 187  Q
    |||| |||||||||| |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||    
T  27715192 aggctcaaattgtgataatgaagtattattgc--taatttagataaggatctttgaataccacattctcctcctc 27715264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 27682575 - 27682419
Alignment:
Q  1 cccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttg 100  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27682575 cccatgtctttctttgttcctctttcatcaattcctgttgttgcaatgaagcattgatatcctcctctgtctctgaaactccaacttccaccaatctttg 27682476  T
Q  101 cttttttagaggaggcacaaattgtgacaatgaagtattatttctataattgagata 157  Q
    |||||||||||||||| |||||||||| |||||||||||||| || | |||||||||    
T  27682475 cttttttagaggaggctcaaattgtgataatgaagtattattgctctgattgagata 27682419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 27703413 - 27703567
Alignment:
Q  1 cccatgtctttctttgttcctctttcgtcaaatcctgttgttgcaatgaagcattgatatcctcct------ctgtctctgaaactccaacttccaccaa 94  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||      |||||||||||||||| | ||||||| |    
T  27703413 cccatgtctttttttgttcctctttctttaaatcctgttgttgcaatgaagcattgatatcctcctcttcctctgtctctgaaactcccatttccaccga 27703512  T
Q  95 tctttgcttttttagaggaggcacaaattgtgacaatgaagtattatttctataa 149  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  27703513 tctttgcttttttagaggaggcacaaattgtgataatgaagtattattgctataa 27703567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 26852166 - 26852086
Alignment:
Q  59 atcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  26852166 atcctcctctgtctctgaaactctaacttccatcaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 26852086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26650124 - 26650051
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26650124 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26650051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26756092 - 26756019
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  26756092 tctgtctttgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataataaagtatt 26756019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 28782560 - 28782487
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28782487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 28789934 - 28789861
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 25486898 - 25486821
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcac--aaattgtgacaatgaag 135  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||| |||||||    
T  25486898 tcctcccctttctctgaaactcccacttccaccaatctttgcttttttagaggaggcacataaattgtgataatgaag 25486821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26626733 - 26626660
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26626660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26732710 - 26732637
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtatt 26732637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 25548497 - 25548422
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| | |||||||    
T  25548497 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgaggaggcataaattgtaataatgaag 25548422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 28795946 - 28795879
Alignment:
Q  72 tctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  28795946 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 27078861 - 27078781
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgc-ttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    |||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||  |||| ||||| || ||||||||    
T  27078861 tcctcctctgtctcggaaactcccacttccaccaatccttgctttttttagaggaggttcaaactgtgataacgaagtatt 27078781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 26953205 - 26953131
Alignment:
Q  65 ctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    |||||||||||||||||| ||||| || ||||| |||||||| ||||||||| ||||||| || ||| |||||||    
T  26953205 ctctgtctctgaaactcccacttcaacaaatctatgctttttcagaggaggctcaaattgcgataataaagtatt 26953131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 26146496 - 26146443
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagagga 113  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||| |||||    
T  26146496 tcctcccctttctctgaaactcccacttccaccaatctttgctttttttgagga 26146443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 27695297 - 27695331
Alignment:
Q  153 agataaggatctttgaataccacattctcctcctc 187  Q
    |||||||||||| ||||||||||||||||||||||    
T  27695297 agataaggatctgtgaataccacattctcctcctc 27695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 26059433 - 26059392
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgc 101  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  26059433 tcctcccctttctctgaaactcccacttccaccaatctttgc 26059392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 26079403 - 26079362
Alignment:
Q  60 tcctcctctgtctctgaaactccaacttccaccaatctttgc 101  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  26079403 tcctcccctttctctgaaactcccacttccaccaatctttgc 26079362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 26638986 - 26638921
Alignment:
Q  70 tctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||| ||||||| ||| | ||||||||||||||||| | ||||| | |||||||||| |||||||    
T  26638986 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 26744952 - 26744887
Alignment:
Q  70 tctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||| ||||||| ||| | ||||||||||||||||| | ||||| | |||||||||| |||||||    
T  26744952 tctctaaaactcccactcctaccaatctttgctttttcaaaggagactcaaattgtgataatgaag 26744887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 11078 - 11005
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 11005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 10265 - 10338
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 10338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 1305 - 1378
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    ||||| ||||||||| | ||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||    
T  1305 tctgtgtctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtaataatgaagtatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18652126 - 18652195
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18652195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18676184 - 18676253
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18676253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18686224 - 18686293
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaag 18686293  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18720714 - 18720783
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18720783  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 18728150 - 18728219
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaag 135  Q
    ||||||||||||||||| |||||||| ||||| |||||||| || | |||   ||||||||| |||||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaag 18728219  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 26139607 - 26139534
Alignment:
Q  66 tctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggcacaaattgtgacaatgaagtatt 139  Q
    |||||||||| || ||| || ||||| ||||| | ||||||||| ||||| | ||||||||| |||||||||||    
T  26139607 tctgtctctggaattcctacatccacaaatctatccttttttagtggagggagaaattgtgataatgaagtatt 26139534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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