View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_3 (Length: 511)
Name: NF3965_low_3
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 43956952 - 43956471
Alignment:
| Q |
13 |
cagacctggaattgaatgaagagttgtaatgcttaaattcaaacgaaaacaagtgtgctgagtactgatattaaaacgttcacattcttatacagtattc |
112 |
Q |
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| T |
43956952 |
cagacctggaattgaatgaagagttgtaatgcttaaattcaaacgaaaacaagtgtgctgagtactgatattaaaacgttcacattcttatacagtattc |
43956853 |
T |
|
| Q |
113 |
atcataaccttgaattcacaaatacttt--gattatcttgagatcttttaatggtcactggtcagtaatcaaatagatcagtctcaaaagtatttgcaat |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43956852 |
atcataaccttgaattcacaaatactttttgattatcttgagatcttttaatggtcactggtcagtaatcaaatagatcagtctcaaaagtatttgcaat |
43956753 |
T |
|
| Q |
211 |
tgtctgtaattaagtcattctgttatagccccgtattgcacttggaagcgcaaaatacacttaaaaagtgtcttgcatctatttttggacaaaagacaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43956752 |
tgtctgtaattaagtcattctgttatagccccgtattgcacttggaagcacaaaatacacttataaagtgtcttgcatctatttttggacaaaagacaac |
43956653 |
T |
|
| Q |
311 |
aattttaagtgacttcttgaatattaatcctccgagtcatttaaataaatttaaatagtgacgaaatagatttatatattttgtaccatttagagctact |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43956652 |
aattttaagtgacttcttgaatattaatcctccgagtcatttaaataaatttaaatagtgacgaaatagatttatatattttttaccatttagagctact |
43956553 |
T |
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| Q |
411 |
aagattnnnnnnnntgtcgacttactgctagagctacaacattgatgtagaagtcaacaagtgttgcatccatccacctgta |
492 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43956552 |
aagattaaaaaaaatgtcgacttactgctagagctacaacattgatgtagaagtcaacaagtgttgcatccatccacctgta |
43956471 |
T |
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