View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_5 (Length: 410)
Name: NF3965_low_5
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 410
Target Start/End: Original strand, 45160039 - 45160424
Alignment:
| Q |
14 |
cagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatattgtca |
113 |
Q |
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| T |
45160039 |
cagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatattgtca |
45160138 |
T |
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| Q |
114 |
caaaaaactta----------tagcgccttgaatgtgtcatttacataaaataaaatttgtaccagtaaattattgatcacattcatacaaaaaacacta |
203 |
Q |
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| T |
45160139 |
caaaaaacttacaatgttttatagcgccttgaatgtgtcatttacataacataaaatttgtaccaataaattattgatcacattcatacaaaaaacacta |
45160238 |
T |
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| Q |
204 |
atcactaattatttttaaaactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttgg |
303 |
Q |
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| T |
45160239 |
atcactaattattttt----------------aaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttg- |
45160321 |
T |
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| Q |
304 |
tatgttttcaattatatctatttaagtttccaattcagtcttacaaacaatttcatatctagtatttgagagttacaaatataacttgtgaggatgaatt |
403 |
Q |
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| T |
45160322 |
----ttttcaattatatctatttaagtttcaaattcagtctttcaaaaaatttcatatctagtatttgagagttacaaatataacttgttaggatgaact |
45160417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 14 - 320
Target Start/End: Complemental strand, 24128391 - 24128096
Alignment:
| Q |
14 |
cagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatattgtca |
113 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||| || ||||||||||||| |||||| ||||| |||||||||||||||||||| |||| |
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| T |
24128391 |
cagtttgagtatttaaggtttgcaagtcttggagtcattggtgctttagtgaaggtattacatgaaaataaagtcattttaattacaaaaaatatcgtca |
24128292 |
T |
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| Q |
114 |
caaaaaacttata----------gcgccttgaatgtgtcatttacataaaataaaatttgtaccagtaaattattgatcacattcatacaaaaaacacta |
203 |
Q |
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| T |
24128291 |
caaaaaacttacaatgtttgattgtgccttgaatgtttcatttacataaaat-----ttgtaccaataaattattgatcatattcaaacaaaaaacacta |
24128197 |
T |
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| Q |
204 |
atcactaattatttttaaaactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttgg |
303 |
Q |
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| T |
24128196 |
atcactaattattttt----------------aaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttgg |
24128113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 410
Target Start/End: Complemental strand, 24128070 - 24127968
Alignment:
| Q |
309 |
tttcaattatatctatttaagtttccaattcagtcttacaaacaatttcatatct--agtatttgagagttacaaatataacttgtgaggatgaatttat |
406 |
Q |
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| T |
24128070 |
tttcaattatatctatttaagtttcaaattcattcttataaa-agtttcatatatttagtatctgagagttacaaatataacttgttaggatgaattcat |
24127972 |
T |
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| Q |
407 |
atac |
410 |
Q |
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|||| |
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| T |
24127971 |
atac |
24127968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 9518303 - 9518360
Alignment:
| Q |
17 |
tttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattac |
74 |
Q |
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| T |
9518303 |
tttgagcatttaagacttgctagtcttggagtcatcggtgcgttggtgaaggtattac |
9518360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 40806501 - 40806456
Alignment:
| Q |
29 |
aggcttgcaagtctcggagtcattggtgccttggtgaaggtattac |
74 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
40806501 |
aggcttggtagtcttggagtcattggtgctttggtgaaggtattac |
40806456 |
T |
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