View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3965_low_9 (Length: 325)
Name: NF3965_low_9
Description: NF3965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3965_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 40410953 - 40411051
Alignment:
| Q |
19 |
atactatctctgacaacggataaaaggtatgatctaacttagaacatatatacttccatatattattgccctcccaactattaaatcattgagatggcaa |
118 |
Q |
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| T |
40410953 |
atactacctctgacaacggataaaaggtatgatctaacttagaacata----cttccatatattattgccctcccaactattaaatcatagagatggcaa |
40411048 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 40411527 - 40411612
Alignment:
| Q |
221 |
ataattgcttgccgaatactactgctagtacaaagtgtacaaccttgttacatgatatatataagctgaatacgtacgttgtccttcat |
309 |
Q |
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| T |
40411527 |
ataattgcttgccgaatactact---agtacaaagtgtacaaccttgttacatgatatatataaactgaatacgtacgttgtccttcat |
40411612 |
T |
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