View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3966_high_6 (Length: 241)
Name: NF3966_high_6
Description: NF3966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3966_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 31953157 - 31953370
Alignment:
| Q |
11 |
cagagagaaaacagagtattttagaacttaccctaccatagcgaccagttggatcagtttccacataaccattctcttccttgaattcctccatgttctc |
110 |
Q |
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| T |
31953157 |
cagagagaaaacagagtattttagaacttaccctaccatagcgaccagttggatcagtttccacataacgattctcttccttgaattcctccatgctctc |
31953256 |
T |
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| Q |
111 |
tctcttacaaaacatgtctaattctaagctatatacatacaccaaattaacaataatcttctatattatcgttcgtgtcgcgattcttgatattgcaaac |
210 |
Q |
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| T |
31953257 |
tctcttacaaaacatgtctaattcttagctatatac--acaccaaattaacaataatcttctatattatcgttcgtgtcgcgattcttgatattgcaaac |
31953354 |
T |
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| Q |
211 |
aattatagtcaaatat |
226 |
Q |
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|||||||||||||||| |
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| T |
31953355 |
aattatagtcaaatat |
31953370 |
T |
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