View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3966_low_1 (Length: 567)
Name: NF3966_low_1
Description: NF3966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3966_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 49510932 - 49510384
Alignment:
| Q |
1 |
agtctccatcataggcgaatcaggaacagaatgaacatcctgcttcaagttcttacaattcccgaaagatccaggttgagaaacaccatcaggagcttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49510932 |
agtctccatcataggcgaatcaggaacagaatgaacatcctgcttcaagttcttacaattcccgaaagatccaggttgagaaacaccatcaggagcttcc |
49510833 |
T |
|
| Q |
101 |
ccagtggaaccttgttcaatatgattattcccagcaacatcatcctcaagacctaaaagatgattcacagaagaagcggcagaatcagaaaaacctcgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49510832 |
ccagtggaaccttgttcaatatgattattcccagcaacatcatcctcaagacctaaaagatgattcacagaagaagcggcagaatcagaaaaacctcgat |
49510733 |
T |
|
| Q |
201 |
taagcgacgtaacggcaccgtttaaggtatcaaagaaccattcaccggatctaacagtaggatcgagaatttgcggtggaattgattgagcagattcagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49510732 |
taagcgacgtaacggcaccgtttaaggtatcaaagaaccattcaccggatctaacagtaggatcgagaatttgcggtggaattgactgagcagattcagg |
49510633 |
T |
|
| Q |
301 |
tttcgatggaaacagaaaaagacgaatacgcgagggtttcaaagacgaattcgtagaattcgttcgatcgtattcatcgatcatgttttctaaatcttca |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49510632 |
tttcgatggaaacagaaaaagacgaattcgcgagggtttcaaagacgaattcgtagaattcgttcgatcgtattcatcgatcatgttttctaaatcttca |
49510533 |
T |
|
| Q |
401 |
tcggttgaaacggagattaacgaatctaggtcttcgtttggaagctgatacttgaaagtgaacggtcttccattaagcaaggttttggagaggcgcgtgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49510532 |
tcggttgaaacggagattaacgaatctaggtcttcgtttggaagctgatacttgaaagtgaacggtcttccattaagcaaggttttggagaggcgcgtgg |
49510433 |
T |
|
| Q |
501 |
ataaatccccaagtgaggtggcgcgttcaacaacaacgatgcgagtatc |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49510432 |
ataaatccccaagtgaggtggcgcgttcaacaacaacgatgcgagtatc |
49510384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 35070093 - 35070144
Alignment:
| Q |
3 |
tctccatcataggcgaatcaggaacagaatgaacatcctgcttcaagttctt |
54 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
35070093 |
tctccatcataggcgaaacaggaatagaatgaacatcctgcttcaaattctt |
35070144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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