View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3966_low_4 (Length: 341)
Name: NF3966_low_4
Description: NF3966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3966_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 146 - 326
Target Start/End: Original strand, 39839876 - 39840056
Alignment:
| Q |
146 |
aagattgaatttgagatctctcatatcatattaggcatagcaaccatgacagttgatatctccaaggtcttccaaaaactttgcaacaaaattgcaatct |
245 |
Q |
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| T |
39839876 |
aagattgaatttgagatctctcatatcatattaggcatagcaaccatgacagttgatatctccaacgtcttccaaaaactttgcaacaaaattgcaatct |
39839975 |
T |
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| Q |
246 |
tactaatattcgtgttagtagaacttatcatcttcatttggaaactaacatcagatacacaatcaatcacaactcgccaat |
326 |
Q |
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| T |
39839976 |
tactaatattcgtgttagtagaacttatcatcttcatttggaaactaacatcagatacacaatcaatcacaactcgccaat |
39840056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 39839746 - 39839846
Alignment:
| Q |
14 |
agacaaaaacatcattttccttagttttccatccacttcactacnnnnnnnnnnnnngtacattattaggctgcacctacacacatgatctgttagatta |
113 |
Q |
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| T |
39839746 |
agacaaaaacatcattttccttagttttccatccacttcactac----atatatatagtacattattaggctgcacctacacacatgttctgttagatta |
39839841 |
T |
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| Q |
114 |
taatt |
118 |
Q |
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| T |
39839842 |
taatt |
39839846 |
T |
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