View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3967_high_1 (Length: 606)
Name: NF3967_high_1
Description: NF3967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3967_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 267 - 590
Target Start/End: Complemental strand, 22595088 - 22594768
Alignment:
| Q |
267 |
tctcgttgcaaaacattatgaaagaaatctttatggctgattaacttataaaagtgcttttaaaaatataaatttcactttcatatatttagttgctttt |
366 |
Q |
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| T |
22595088 |
tctcgttgcaaaacattatgaaagaaatcttcatggctgattgacttataaaagtgcttttaaaaatataaatt-cactttcatatatttagttgctttt |
22594990 |
T |
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| Q |
367 |
agtannnnnnnnncttcttgttttttgaaattgattttaactttaaggattatatttacctccaaacacgataatttatcttggtgtatgttttgttgcg |
466 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22594989 |
agtatttttttt--ttcttgttttttgaaattgattttaactttaaggattatatttacctccaaacccgataatttatcttggtgtatgttttgttgcg |
22594892 |
T |
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| Q |
467 |
cgcccgcatttccaaacacatgtccgcccttgcttttgttgcgatttcttaaaagctacaaaaccaaacttctacctagacgcagcaagcttgttgtgat |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22594891 |
cgcccgcatttccaaacacatgtccgcccttgcttttgttgcgatttcttaaaagctacaaaaccaaacttctacctagacgcagcaagcttgttgtgat |
22594792 |
T |
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| Q |
567 |
tttggcaaaacatgaggttcaacc |
590 |
Q |
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|||||||||||||||||||||||| |
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| T |
22594791 |
tttggcaaaacatgaggttcaacc |
22594768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 22595524 - 22595262
Alignment:
| Q |
11 |
cagagagctacatgagtgaaaaagtgtaggtatagtaa----atgtgagttagaactcttaaaccggatggatgaaaaattagacgttgagtataaagtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22595524 |
cagagagctacatgagtgaaaaagtgtaggtatagtaagtaaatgtgagttagaactcttaaaccggatggatgaaaaattagactttgagtataaagtg |
22595425 |
T |
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| Q |
107 |
agatgacttatacaccaaatatatgtttggtttgaattattttcatcgactccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgtt |
206 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22595424 |
agatgacttatacaccaaatatatgttcggtttgaattattttcatcgattccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgtt |
22595325 |
T |
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| Q |
207 |
gtttctgcgttaatatagttatttgccgtgattttacaaatgtgtatccaagcacatacgtct |
269 |
Q |
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||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
22595324 |
gtttctgagttaatatagttatttgccgtgattttgcaaacgtgtatccaagcacatacgtct |
22595262 |
T |
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