View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3967_high_3 (Length: 228)

Name: NF3967_high_3
Description: NF3967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3967_high_3
NF3967_high_3
[»] chr5 (4 HSPs)
chr5 (60-211)||(28136592-28136739)
chr5 (133-184)||(43208289-43208340)
chr5 (1-42)||(28136531-28136572)
chr5 (151-184)||(18607112-18607145)
[»] chr8 (3 HSPs)
chr8 (143-189)||(37225753-37225799)
chr8 (133-181)||(14227215-14227263)
chr8 (151-189)||(3508063-3508101)
[»] chr6 (8 HSPs)
chr6 (147-189)||(27661743-27661785)
chr6 (151-189)||(10157995-10158033)
chr6 (150-188)||(26650236-26650274)
chr6 (150-188)||(26756204-26756242)
chr6 (155-189)||(28783012-28783046)
chr6 (151-184)||(12627831-12627864)
chr6 (151-184)||(13689208-13689241)
chr6 (148-189)||(29449689-29449730)
[»] chr2 (4 HSPs)
chr2 (144-189)||(44605149-44605194)
chr2 (147-189)||(22131264-22131306)
chr2 (151-188)||(10250737-10250774)
chr2 (127-163)||(36700176-36700212)
[»] chr3 (1 HSPs)
chr3 (148-187)||(45382751-45382790)
[»] chr7 (5 HSPs)
chr7 (151-189)||(36314637-36314675)
chr7 (143-189)||(37775985-37776031)
chr7 (151-189)||(44172900-44172938)
chr7 (148-189)||(43160492-43160533)
chr7 (135-187)||(31753774-31753826)
[»] chr4 (1 HSPs)
chr4 (151-189)||(44796972-44797010)
[»] chr1 (4 HSPs)
chr1 (143-185)||(17080895-17080937)
chr1 (151-189)||(43609828-43609866)
chr1 (143-185)||(43942327-43942369)
chr1 (147-187)||(23605132-23605172)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 28136592 - 28136739
Alignment:
Q  60 gttcacacttaaaatgatgatagcataccatactataaagcacatactcaaacacggacaccacacagacactacacatcaataccaatagtaatttgag 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||    
T  28136592 gttcacacttaaaatgatgatagcataccatactataaagcacatactcaaacacggacaccac-------ctacacatcaataccaatagtaatttaag 28136684  T
Q  160 aaaataacatatttcaatgtaatcacatgtcagac---aatgcttgtcggatact 211  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28136685 aaaataacatatttcaatgtaatcacatgtcagacactaatgcttgtcggatact 28136739  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 43208340 - 43208289
Alignment:
Q  133 acacatcaataccaatagtaatttgagaaaataacatatttcaatgtaatca 184  Q
    ||||||||| ||| |||||||||||||||||| ||||| |||||||||||||    
T  43208340 acacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28136531 - 28136572
Alignment:
Q  1 tttcaaaatttgttgtcgaatcacatcccactgattattcgt 42  Q
    ||||||||||||||||||||| ||||||||||||| ||||||    
T  28136531 tttcaaaatttgttgtcgaattacatcccactgatgattcgt 28136572  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 18607145 - 18607112
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatca 184  Q
    |||||||||||||||||||| |||||||||||||    
T  18607145 taatttgagaaaataacataattcaatgtaatca 18607112  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 37225799 - 37225753
Alignment:
Q  143 accaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    ||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  37225799 accaataataatttgagaaaataacataattcaatgtaatcatatgt 37225753  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 14227215 - 14227263
Alignment:
Q  133 acacatcaataccaatagtaatttgagaaaataacatatttcaatgtaa 181  Q
    |||| |||| ||||||| |||||||||||||||||||| ||||||||||    
T  14227215 acacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 3508063 - 3508101
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  3508063 taatttgagaaaataacataattcaatgtaatcatatgt 3508101  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 27661743 - 27661785
Alignment:
Q  147 atagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  27661743 atagtaatttaagaaaataatatatttcaatgtaatcacatgt 27661785  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 10157995 - 10158033
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgt 10158033  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 26650274 - 26650236
Alignment:
Q  150 gtaatttgagaaaataacatatttcaatgtaatcacatg 188  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacatg 26650236  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 26756242 - 26756204
Alignment:
Q  150 gtaatttgagaaaataacatatttcaatgtaatcacatg 188  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacatg 26756204  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 28783046 - 28783012
Alignment:
Q  155 ttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    ||||||||||||||||||| |||||||||||||||    
T  28783046 ttgagaaaataacatatttgaatgtaatcacatgt 28783012  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 12627864 - 12627831
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatca 184  Q
    |||||| |||||||||||||||||||||||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatca 12627831  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 13689241 - 13689208
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatca 184  Q
    |||||||||||||||||| |||||||||||||||    
T  13689241 taatttgagaaaataacaaatttcaatgtaatca 13689208  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 29449689 - 29449730
Alignment:
Q  148 tagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgt 29449730  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 44605194 - 44605149
Alignment:
Q  144 ccaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||| |||||||||||||||||||| ||||||||||| ||||||    
T  44605194 ccaataataatttgagaaaataacataattcaatgtaattacatgt 44605149  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 22131306 - 22131264
Alignment:
Q  147 atagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||||||| ||||  ||||||||||||||||||    
T  22131306 atagtaatttgagaaaatgacattgttcaatgtaatcacatgt 22131264  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 10250737 - 10250774
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatg 188  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10250737 taatttgagaaaataacacaattcaatgtaatcacatg 10250774  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 36700176 - 36700212
Alignment:
Q  127 gacactacacatcaataccaatagtaatttgagaaaa 163  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  36700176 gacactacacatcaataccgatattaatttgagaaaa 36700212  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 45382751 - 45382790
Alignment:
Q  148 tagtaatttgagaaaataacatatttcaatgtaatcacat 187  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacat 45382790  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 36314675 - 36314637
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  36314675 taatttgagaaaatgacatatttcaatgtaatcatatgt 36314637  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 37775985 - 37776031
Alignment:
Q  143 accaatagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||| ||||||||||||||||| ||||| || |||||||||||||||    
T  37775985 accagtagtaatttgagaaaatgacataattaaatgtaatcacatgt 37776031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 44172938 - 44172900
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  44172938 taatttgagaaaatgacataattcaatgtaatcacatgt 44172900  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 43160492 - 43160533
Alignment:
Q  148 tagtaatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    ||||||||| ||||||||||||| || |||||||||||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgt 43160533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 31753826 - 31753774
Alignment:
Q  135 acatcaataccaatagtaatttgagaaaataacatatttcaatgtaatcacat 187  Q
    ||||| |||||| ||||||||||||||||| | ||| || |||||||||||||    
T  31753826 acatcgataccagtagtaatttgagaaaattaaataattgaatgtaatcacat 31753774  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 44797010 - 44796972
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  44797010 taatttgagaaaataacataattcaatgtaattacatgt 44796972  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 17080937 - 17080895
Alignment:
Q  143 accaatagtaatttgagaaaataacatatttcaatgtaatcac 185  Q
    ||||||| |||||||||||||||||||| || |||||||||||    
T  17080937 accaataataatttgagaaaataacataattgaatgtaatcac 17080895  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 43609866 - 43609828
Alignment:
Q  151 taatttgagaaaataacatatttcaatgtaatcacatgt 189  Q
    |||||||||||||||||||| || |||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacatgt 43609828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 43942327 - 43942369
Alignment:
Q  143 accaatagtaatttgagaaaataacatatttcaatgtaatcac 185  Q
    ||||||| | |||||||||||||||||| ||||||||||||||    
T  43942327 accaataatgatttgagaaaataacataattcaatgtaatcac 43942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 23605172 - 23605132
Alignment:
Q  147 atagtaatttgagaaaataacatatttcaatgtaatcacat 187  Q
    |||||||||||||||||||||| | || |||||||||||||    
T  23605172 atagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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