View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3967_low_2 (Length: 253)

Name: NF3967_low_2
Description: NF3967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3967_low_2
NF3967_low_2
[»] chr6 (28 HSPs)
chr6 (26-210)||(31290408-31290598)
chr6 (208-253)||(31290325-31290370)
chr6 (36-101)||(2820373-2820438)
chr6 (165-210)||(27608250-27608295)
chr6 (165-210)||(27715637-27715682)
chr6 (48-120)||(5970098-5970170)
chr6 (48-120)||(15443692-15443764)
chr6 (163-210)||(26058891-26058938)
chr6 (163-210)||(26078861-26078908)
chr6 (214-249)||(26952511-26952546)
chr6 (214-249)||(26962004-26962039)
chr6 (50-121)||(32313403-32313474)
chr6 (63-121)||(8931591-8931649)
chr6 (62-120)||(9195744-9195802)
chr6 (62-120)||(9617445-9617503)
chr6 (62-120)||(16766708-16766766)
chr6 (59-108)||(10335378-10335427)
chr6 (51-120)||(25038061-25038130)
chr6 (63-120)||(26562701-26562758)
chr6 (176-209)||(26876539-26876572)
chr6 (59-104)||(29449689-29449734)
chr6 (49-102)||(34625732-34625785)
chr6 (50-110)||(7377978-7378038)
chr6 (62-114)||(9025490-9025542)
chr6 (62-110)||(9629394-9629442)
chr6 (48-120)||(10760832-10760903)
chr6 (50-110)||(20371110-20371170)
chr6 (52-120)||(21395298-21395365)
[»] chr1 (13 HSPs)
chr1 (38-169)||(264591-264724)
chr1 (62-120)||(44482241-44482299)
chr1 (48-108)||(14332406-14332465)
chr1 (54-98)||(23605132-23605176)
chr1 (50-93)||(17080898-17080941)
chr1 (50-120)||(5376490-5376560)
chr1 (52-114)||(6427351-6427413)
chr1 (62-120)||(25361897-25361955)
chr1 (62-116)||(34712377-34712431)
chr1 (57-103)||(43609825-43609871)
chr1 (48-93)||(21057780-21057825)
chr1 (64-108)||(40158412-40158456)
chr1 (50-110)||(41877470-41877530)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-114)||(99889-99956)
[»] chr5 (14 HSPs)
chr5 (62-120)||(22423802-22423860)
chr5 (57-115)||(4991372-4991429)
chr5 (47-116)||(38749557-38749626)
chr5 (71-114)||(16374338-16374381)
chr5 (50-120)||(3966502-3966572)
chr5 (50-120)||(18592072-18592142)
chr5 (62-120)||(21522761-21522819)
chr5 (62-120)||(21533327-21533385)
chr5 (52-114)||(43208270-43208332)
chr5 (52-113)||(36838544-36838605)
chr5 (63-116)||(41558648-41558701)
chr5 (50-118)||(6035482-6035549)
chr5 (62-110)||(8420038-8420086)
chr5 (88-120)||(37328834-37328866)
[»] chr3 (8 HSPs)
chr3 (59-164)||(45382751-45382858)
chr3 (50-121)||(16192739-16192810)
chr3 (52-120)||(8039825-8039893)
chr3 (47-98)||(19323460-19323511)
chr3 (51-106)||(28576716-28576771)
chr3 (48-110)||(35990525-35990587)
chr3 (51-116)||(3185242-3185306)
chr3 (56-104)||(27097065-27097113)
[»] chr7 (12 HSPs)
chr7 (62-120)||(6028636-6028694)
chr7 (62-115)||(7328686-7328739)
chr7 (62-123)||(7438717-7438778)
chr7 (53-116)||(31808503-31808566)
chr7 (59-106)||(43160492-43160539)
chr7 (62-116)||(17307904-17307958)
chr7 (62-120)||(24339653-24339711)
chr7 (51-116)||(16341496-16341561)
chr7 (50-119)||(32308119-32308188)
chr7 (62-114)||(12843171-12843223)
chr7 (62-114)||(27945052-27945104)
chr7 (51-119)||(38134397-38134465)
[»] chr2 (4 HSPs)
chr2 (62-108)||(44605141-44605187)
chr2 (48-110)||(31026692-31026754)
chr2 (51-119)||(40681982-40682050)
chr2 (51-119)||(44860320-44860388)
[»] scaffold0349 (1 HSPs)
scaffold0349 (165-210)||(16263-16308)
[»] chr8 (11 HSPs)
chr8 (51-110)||(12985392-12985451)
chr8 (62-120)||(22651987-22652045)
chr8 (172-210)||(29270983-29271021)
chr8 (62-120)||(29447100-29447158)
chr8 (59-113)||(31681827-31681881)
chr8 (49-114)||(31548289-31548354)
chr8 (62-129)||(9382983-9383048)
chr8 (51-114)||(13650755-13650819)
chr8 (51-114)||(13709398-13709462)
chr8 (62-110)||(13844596-13844644)
chr8 (127-167)||(31105813-31105853)
[»] chr4 (7 HSPs)
chr4 (62-121)||(24613690-24613749)
chr4 (50-120)||(35723374-35723445)
chr4 (47-98)||(44796974-44797025)
chr4 (37-75)||(18727855-18727893)
chr4 (62-123)||(4383379-4383439)
chr4 (51-116)||(18513235-18513300)
chr4 (50-110)||(8423718-8423778)
[»] scaffold0123 (1 HSPs)
scaffold0123 (63-119)||(44516-44572)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 31290598 - 31290408
Alignment:
Q  26 aaattaacattgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgta------attacatatgtcggtgtcgtgtcggtgt 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| |||||||||    
T  31290598 aaattaacattgacattgattcgtcgacaccgatagtaatttgagaaaataacataaatgaatgtatacgtaattacatatgtcggtgtcatgtcggtgt 31290499  T
Q  120 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  31290498 caaatacacacatgttggacaccagacacgccttcaatgagaagtgtttgggaattgaatacaggtgcctcgagcctcatgtagtttctgt 31290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 31290370 - 31290325
Alignment:
Q  208 tgtcagtatcaaacactatatattgcaagataaaacaacaactaac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31290370 tgtcagtatcaaacactatatattgcaagataaaacaacaactaac 31290325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 2820438 - 2820373
Alignment:
Q  36 tgacattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatg 101  Q
    |||||||||| |||  | ||| ||| |||||||||||||||| ||||||||||||||| |||||||    
T  2820438 tgacattgatatgtaaataccaataataatttgagaaaataaaataaatgaatgtaatcacatatg 2820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 27608250 - 27608295
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  27608250 gtttgggaattcaaaataggtgcatccagcctcatgtagtttctgt 27608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 27715637 - 27715682
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27715637 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 27715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 5970170 - 5970098
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| | || |||||||| ||||| |||||| | | |||||||||| |||| |||||||||||||||||    
T  5970170 gtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtc 5970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 15443692 - 15443764
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||| | ||| ||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||    
T  15443692 gtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgttgtgtcgatgtc 15443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 26058938 - 26058891
Alignment:
Q  163 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26058938 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 26078908 - 26078861
Alignment:
Q  163 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26078908 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 26952546 - 26952511
Alignment:
Q  214 tatcaaacactatatattgcaagataaaacaacaac 249  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26952546 tatcaaatactatatattgcaagataaaacaacaac 26952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 26962039 - 26962004
Alignment:
Q  214 tatcaaacactatatattgcaagataaaacaacaac 249  Q
    ||||||| ||||||||||||||||||||||||||||    
T  26962039 tatcaaatactatatattgcaagataaaacaacaac 26962004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 32313403 - 32313474
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    ||||||| ||| ||| ||||||||||||||| | | |||| ||||| || ||| ||||||||||||||||||    
T  32313403 cgacaccaataataagttgagaaaataacatgattcaatgcaattatatgtgtgggtgtcgtgtcggtgtca 32313474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 8931649 - 8931591
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||||||||||||||| | | | |||||| || ||||| ||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtca 8931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 9195802 - 9195744
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||||    
T  9195802 taatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 9617445 - 9617503
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | |||||||||| || ||||||||||||  |||||||    
T  9617445 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 16766708 - 16766766
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 10335427 - 10335378
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    ||||||||||||||||| |||||| |||||||||| | || |||||||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 25038130 - 25038061
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||| || |||||||||||||| |||||| | | |||||||||| |||||||| | |||| ||||||    
T  25038130 gacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtc 25038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 26562701 - 26562758
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||||||||| |||||| | | |||||||| || ||||| |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 26876572 - 26876539
Alignment:
Q  176 gaatataggtgcctccagcctcatgtagtttctg 209  Q
    |||||||||||| |||||||||||||||||||||    
T  26876572 gaatataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 29449689 - 29449734
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 104  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 34625732 - 34625785
Alignment:
Q  49 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgt 102  Q
    |||||||||||| |||||||||||||| |  ||| |||||||||| ||||||||    
T  34625732 tcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacatatgt 34625785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 7377978 - 7378038
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| ||  ||||||||||||| |||||| | |||||||||| || |||||||||||    
T  7377978 cgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 7378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 9025542 - 9025490
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||    
T  9025542 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 9629394 - 9629442
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||||||||| |||||| | |||||||||| || |||||||||||    
T  9629394 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9629442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 10760903 - 10760832
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| |||| |||||||||||||| |||| | |||||||||| |||  ||||| |||||||| ||||||    
T  10760903 gtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgtcgatgtcgtgttggtgtc 10760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 20371170 - 20371110
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| || |||||||||||||| |||||| | ||||| |||| || |||||||||||    
T  20371170 cgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcg 20371110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 21395365 - 21395298
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| || ||||||||||||||| ||||| | | ||||||||||  ||||||||||||||| |||||    
T  21395365 acaccgctaataatttgagaaaata-cataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtc 21395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 264591 - 264724
Alignment:
Q  38 acattgatttgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgtt 135  Q
    |||||||||||||| |||| ||| |||||| ||||| |||||||  | |||||||| |||| ||| ||||||||||| ||||| || ||  ||| |||||    
T  264591 acattgatttgtcgtcaccaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgtcgaacacaaacatatgtt 264690  T
Q  136 ggacaccagacacgccttcaatgagaagtgtttg 169  Q
    || |||| |||||||| || ||||||||||||||    
T  264691 gggcacctgacacgccatctatgagaagtgtttg 264724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 44482241 - 44482299
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||    
T  44482241 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 14332406 - 14332465
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    |||||||||||||  ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  14332406 gtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  54 accgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 17080941 - 17080898
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaat 93  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  17080941 cgacaccaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 5376560 - 5376490
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || |||||| |||||||||||||| | | |||||||| |  |||||||||||||||| ||||    
T  5376560 cgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtc 5376490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 6427351 - 6427413
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||| || |||||||||||||| |||||| | |||||||||| || ||| |||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 25361897 - 25361955
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | | |||||||| || |||| ||||||||||||||||    
T  25361897 taatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 34712431 - 34712377
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||||||||||| | | |||||||| || |||| ||||||||||||    
T  34712431 taatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcgg 34712377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 43609871 - 43609825
Alignment:
Q  57 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtc 103  Q
    |||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 21057780 - 21057825
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaat 93  Q
    |||||||||| || |||||| |||||||||||||| ||||||||||    
T  21057780 gtcgacaccgctaataattttagaaaataacataattgaatgtaat 21057825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 40158456 - 40158412
Alignment:
Q  64 atttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    |||||||||||| ||||||||||||| ||| |||| |||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgt 40158412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 41877530 - 41877470
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| || |||||||||||||| |||||| | | ||||||||||  |||||||||||    
T  41877530 cgacaccgctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcg 41877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 99889 - 99956
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| |||||| |||||||||||||| | |||||||||| || ||| |||||||||||    
T  99889 tgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 22423860 - 22423802
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||    
T  22423860 taatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 4991429 - 4991372
Alignment:
Q  57 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 115  Q
    ||||||||||||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4991429 gatagtaatttgagaaaatgacataaat-catgtaattagatgtgtcggtgtcgtgtcg 4991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 38749626 - 38749557
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||||||||| |||||||| ||||| |||||| | |||||||||| || ||| ||||| |||||||    
T  38749626 tgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcgg 38749557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 16374381 - 16374338
Alignment:
Q  71 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  16374381 aaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtc 16374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 3966502 - 3966572
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || |||||||||||||| ||| || | | |||||||| || ||||||||||||||| |||||    
T  3966502 cgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtcagtgtc 3966572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 18592072 - 18592142
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || || ||| ||||||| |||||| | |||||||||| || || ||||||||||||||||||    
T  18592072 cgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtc 18592142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 21522761 - 21522819
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21522761 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 21533327 - 21533385
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21533327 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 43208332 - 43208270
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||||||||||||| |||||| | |||||||| | || |||| |||| |||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtc 43208270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 36838544 - 36838605
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 113  Q
    |||||| || |||||||||||||| |||||| | | |||||||| || ||||||||||||||    
T  36838544 acaccgctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcgtgt 36838605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 41558701 - 41558648
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||| |||||| | |||||||||| || |||| ||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcgg 41558648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 6035482 - 6035549
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtg 118  Q
    |||||||| || |||||||||||| ||| |||| | | |||||||| || |||||||||||||||||||    
T  6035482 cgacaccgctaataatttgagaaa-taatataattcagtgtaattatatttgtcggtgtcgtgtcggtg 6035549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 8420038 - 8420086
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| |||||||||||| | ||||||||||||  |||||||||||    
T  8420038 taatttgaaaaaataacataattcaatgtaattacaagtgtcggtgtcg 8420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 37328866 - 37328834
Alignment:
Q  88 tgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    ||||||||||| |||||||||||||||||||||    
T  37328866 tgtaattacatgtgtcggtgtcgtgtcggtgtc 37328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 45382751 - 45382858
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgccttcaa 156  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||| | ||| ||||||| | ||  ||| |||| ||||||| |||| |||||| |    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcga 45382850  T
Q  157 tgagaagt 164  Q
    | ||||||    
T  45382851 tcagaagt 45382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 16192810 - 16192739
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||| || ||||||||||||||||||||| | | |||||||| || ||| | ||||||||||||||||    
T  16192810 cgacaccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtca 16192739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 8039893 - 8039825
Alignment:
Q  52 acaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||| || |||||||||||||| | |||| | | |||||||| || |||||||||||||||||||||    
T  8039893 acaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 19323511 - 19323460
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    ||||||||| ||||||||||||||||||| |||||| ||||| |||| ||||    
T  19323511 tgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacat 19323460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 28576716 - 28576771
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 106  Q
    ||||||| || |||||||||||||| ||| || ||||||||||||||| |||||||    
T  28576716 gacaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggt 28576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 35990587 - 35990525
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||  |||| |||| ||||||    
T  35990587 gtcgacactgataataatttgagaaaataaaataactgaatgtaaccacatgtgtcagtgtcg 35990525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 3185306 - 3185242
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||| ||||| |||||| |||| ||| ||||| ||||||||||||||| |||| ||||||||||||    
T  3185306 gacatcgataataatttcagaagata-cataattgaatgtaattacatgtgtcagtgtcgtgtcgg 3185242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 27097113 - 27097065
Alignment:
Q  56 cgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 104  Q
    |||||||||||||||||||| |||||| | ||| |||||| ||||||||    
T  27097113 cgatagtaatttgagaaaattacataattcaatttaattatatatgtcg 27097065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 6028636 - 6028694
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || ||||||||| | |||||||||||| |||||||||||||||| |||||    
T  6028636 taatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtc 6028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 7328739 - 7328686
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 115  Q
    ||||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  7328739 taatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 7438717 - 7438778
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 123  Q
    |||||||| ||||| |||||| | ||||||||||||  |||||||||| |||||||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaa 7438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 31808566 - 31808503
Alignment:
Q  53 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||| |||||||||||||| ||| || | |||||||| |||| ||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgg 31808503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 43160492 - 43160539
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 106  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 17307904 - 17307958
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||||||||||||||||||| | | |||||||| || ||| |||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 24339653 - 24339711
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 16341496 - 16341561
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    ||||| |||| |||||||||||||| |||||| | | |||||||| || || ||||||||||||||    
T  16341496 gacactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcgg 16341561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 32308119 - 32308188
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    |||||||| || |||||||||||||| |||||| | | |||||||  || |||| |||||||||||||||    
T  32308119 cgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtgtcggtgt 32308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 12843223 - 12843171
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||| ||||| |||||| | ||||||||||||| |||| ||||||||||    
T  12843223 taatttgataaaattacataattcaatgtaattacatgtgtcagtgtcgtgtc 12843171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 27945052 - 27945104
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| |||||| | | ||||||||||  |||||||||||||||    
T  27945052 taatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 38134465 - 38134397
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    |||||||||| |||||||||||||| |||||| | |||||||| | || ||||||| || ||| |||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggtctcatgtgggtgt 38134397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 44605187 - 44605141
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 108  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  44605187 taatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 31026692 - 31026754
Alignment:
Q  48 gtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    ||||| ||||||| |||||| ||||||| |||||| | |||||||| | ||||||||||||||    
T  31026692 gtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 40681982 - 40682050
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    |||||||||| |||||||||||||| |||||| | ||||||||| ||  ||||  |||||||| |||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgtcgtgttggtgt 40682050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 44860320 - 44860388
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    ||||||| || ||||||||||||||  ||||| | | |||||||| || |||||||||||||| |||||    
T  44860320 gacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgt 44860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 16308 - 16263
Alignment:
Q  165 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  16308 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 16263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 12985392 - 12985451
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||| ||| |||||||||||||| |||||| | |||||||| | ||||||||||||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcg 12985451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 22651987 - 22652045
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| ||||| |||||| | ||| ||||||||  |||||||||||||||||||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 29270983 - 29271021
Alignment:
Q  172 aattgaatataggtgcctccagcctcatgtagtttctgt 210  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29270983 aattgaatataggtgcatccagtctcatgtagtttctgt 29271021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 29447158 - 29447100
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| ||||||||||    
T  29447158 taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtc 29447100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 31681881 - 31681827
Alignment:
Q  59 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 113  Q
    ||||||||| ||||||| |||||| |||||| ||| |||| ||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 31548354 - 31548289
Alignment:
Q  49 tcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||| | |||||| ||||| |||||| | |||||||| |||| |||||||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 9382983 - 9383048
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatacaca 129  Q
    |||||||||||||  |||||| | ||||||||||  | |||| ||||||||||||||||||| |||||    
T  9382983 taatttgagaaaactacataattcaatgtaatta--tgtgtctgtgtcgtgtcggtgtcaaacacaca 9383048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 13650755 - 13650819
Alignment:
Q  51 gacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| ||||||||||| |  | ||||||||||| ||||| || ||||||||||||    
T  13650755 gacaccgatagtaagttgagaaaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 13709398 - 13709462
Alignment:
Q  51 gacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtc 114  Q
    |||||||||||||| ||||||||||| |  | ||||||||||| ||||| || ||||||||||||    
T  13709398 gacaccgatagtaagttgagaaaatagaagttaatgaatgtaactacatgtgacggtgtcgtgtc 13709462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 13844644 - 13844596
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||||||||| |||||| ||| |||||||| || |||||||||||    
T  13844644 taatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 31105853 - 31105813
Alignment:
Q  127 acacatgttggacaccagacacgccttcaatgagaagtgtt 167  Q
    ||||||||||||||||||||||  |||||||| ||||||||    
T  31105853 acacatgttggacaccagacacatcttcaatgtgaagtgtt 31105813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 24613749 - 24613690
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 121  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| |||||||||||    
T  24613749 taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtca 24613690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 35723445 - 35723374
Alignment:
Q  50 cgacaccgatagtaatttgagaaaata-acataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 120  Q
    |||||||| || ||||||||||||||| |||||| | |||||||||| || |||| ||||||| ||||||||    
T  35723445 cgacaccgctaataatttgagaaaatacacataattcaatgtaattatatgtgtcagtgtcgtatcggtgtc 35723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 44797025 - 44796974
Alignment:
Q  47 tgtcgacaccgatagtaatttgagaaaataacataaatgaatgtaattacat 98  Q
    |||| ||||||| | ||||||||||||||||||||| | |||||||||||||    
T  44797025 tgtcaacaccgacaataatttgagaaaataacataattcaatgtaattacat 44796974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 18727855 - 18727893
Alignment:
Q  37 gacattgatttgtcgacaccgatagtaatttgagaaaat 75  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  18727855 gacattgatttgtcaacaccaatagtaatttgagaaaat 18727893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 4383379 - 4383439
Alignment:
Q  62 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 123  Q
    |||||||| ||||| |||||| | | |||||||||| ||||| |||||||||||||||||||    
T  4383379 taatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaa 4383439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 18513300 - 18513235
Alignment:
Q  51 gacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 116  Q
    |||||||||| |||||||||||||| |||||| | |||||||| | || |||| |||| |||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcgg 18513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 8423778 - 8423718
Alignment:
Q  50 cgacaccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 110  Q
    |||||||| || |||||||||||||| |||||| | | |||||||| | ||||||||||||    
T  8423778 cgacaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcg 8423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 44572 - 44516
Alignment:
Q  63 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgt 119  Q
    ||||||||||||| |||||| | | |||||||| || ||||||| ||||||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgt 44516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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