View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3967_low_4 (Length: 202)
Name: NF3967_low_4
Description: NF3967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3967_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 4028797 - 4028628
Alignment:
| Q |
14 |
cagagatatcaaaatgccatttagtatactgcccaacagctggtcatcgaggctccaaacgcagaaaatccaaagcaaccgataatgactctctgtcaag |
113 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028797 |
cagaaatatcaaaatgccatttagtatactgtccaacagctggtcatcgaggctccaaacgcagaaaatccaaagcaaccgataatgactctctgtca-- |
4028700 |
T |
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| Q |
114 |
aagcagaacagtttaaagaccaacaagtggattagtccaccaatccgataatactaaatttttattcctaca |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028699 |
aagcagaacagtttaaagaccaacaagtggattagtccaccaatccgataatactaaatttttattcctaca |
4028628 |
T |
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