View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_high_12 (Length: 326)
Name: NF3968_high_12
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 26582337 - 26582043
Alignment:
| Q |
15 |
ggagaatggtatcaagtccaatacgtaagtttatgcacacaatgtcgctcctatgaccatgctctcgagcgctgcactcctagacctagcacaaacacta |
114 |
Q |
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| T |
26582337 |
ggagaatggtatcaagtccaatacgaaagtttatgcacacaatgtcgctcctatgaccatgctctcgagcgctgcactcctagacctagcacaaacacta |
26582238 |
T |
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| Q |
115 |
tcccagccacaaagggagaaggaggctagagaaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattccta |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26582237 |
tcccagccacaaagggagaaggaggctagataaatgcggtaaacactcaattacatcagaaaaattcaggagggattgtgaagtcatggtattattccta |
26582138 |
T |
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| Q |
215 |
aaaataccttttaatcgatttaggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttgaaaatacaat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26582137 |
aaaataccttttaatcgatttaggttttatttttccaagaacactttggttctcatggaataaatgtccatgacgacgaattttggaaatacaat |
26582043 |
T |
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