View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3968_high_15 (Length: 296)
Name: NF3968_high_15
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 4232846 - 4233131
Alignment:
| Q |
1 |
attttttggattcaagacttcattacttcaagcggtcttatccatgnnnnnnnttgtgtattttcttatttcaatgtgtttcatagtaatccaaatacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4232846 |
attttttggattcaagacttcattacttcaagtggtcttatccatgaaaaaaattgtgtattttcttatttcaatgtgtttcatagtaatccaaatacaa |
4232945 |
T |
|
| Q |
101 |
gttttccttcattttacaaaattaaaatattaaaaatataccaagatagtgtcgcacaagtggtagatacttggcccccttaaccatttggtcattgatc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4232946 |
gtgttccttcattttacaaaattaaaatattaaaaatgtaccaagatagtgtcgcacaagtggtagatactt-gcccccttaaccatttggtcattgatc |
4233044 |
T |
|
| Q |
201 |
cgtgaccggtacgtatgaagaagcatttcttgggagatgtcaaccccttaaatggatcttagttatctcgaggggattagtctctgc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4233045 |
cgtgaccggtacgtatgaagaagcattttttgggagatgtcaaccccttaaatggatcttagttacctcgagaggattagtctctgc |
4233131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 33736677 - 33736744
Alignment:
| Q |
215 |
atgaagaagcatttcttgggagatgtcaaccccttaaatggatcttagttatctcgaggggattagtc |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||||||||||| | || |||||||||| |
|
|
| T |
33736677 |
atgaagaagcatttgttgggagatgtcaaacccttaaatagatcttagttatattgaagggattagtc |
33736744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Complemental strand, 3119778 - 3119735
Alignment:
| Q |
239 |
gtcaaccccttaaatggatcttagttatctcgaggggattagtc |
282 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
3119778 |
gtcaaccccttaaatggatcttagttaccttgaggggattagtc |
3119735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 2025348 - 2025409
Alignment:
| Q |
207 |
cggtacgtatgaagaagcatttcttgggagatgtcaaccccttaaatggatcttagttatct |
268 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
2025348 |
cggtgcgtatggagaagtatttgttgggagatgtcaaccccttaaatgaatctcagttatct |
2025409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 27153849 - 27153791
Alignment:
| Q |
230 |
ttgggagatgtcaacccctt-aaatggatcttagttatctcgaggggattagtctctgc |
287 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
27153849 |
ttgggagaggtcaacccgtttaaatgaatcttagttacctcgaggggattagtctctgc |
27153791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 34338086 - 34337997
Alignment:
| Q |
195 |
ttgatccgtgaccggtacgtatgaagaagcatttcttgggagatgtcaaccccttaaatggatcttagttatctcgaggggattagtctc |
284 |
Q |
| |
|
||||||| ||| |||| ||||| | || ||||| |||||| | ||||||||||||||||||||| ||||| || |||||| |||||||| |
|
|
| T |
34338086 |
ttgatccttgatcggtgtgtatggaaaaacatttgttgggataggtcaaccccttaaatggatctcagttaccttgagggggttagtctc |
34337997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University