View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3968_high_2 (Length: 753)
Name: NF3968_high_2
Description: NF3968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3968_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 346 - 419
Target Start/End: Original strand, 13245365 - 13245438
Alignment:
| Q |
346 |
aaaaacaaaatagaaggtaaacataaagctacaaccatagggaattaagactaaccccacaaatacagggatgg |
419 |
Q |
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| T |
13245365 |
aaaaacaaaatagaaggtaaacataaagctacaaccatagggaattaagactaaccccacaaacacagggatgg |
13245438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 271 - 408
Target Start/End: Original strand, 7307415 - 7307553
Alignment:
| Q |
271 |
tttattaaaacactcgacctcgagtacaaggtgttccgaaagttaggttagaaacatacaaaa-tgagtcgagaataaaaacaaaatagaaggtaaacat |
369 |
Q |
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| T |
7307415 |
tttatcaaaacactcgacctcgagtacaaggtgtaccaaaactgagcttagaaacttacaaaactgagtcaagaatcaaagcaaaatacaagtcaaactt |
7307514 |
T |
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| Q |
370 |
aaagctacaaccatagggaattaagactaaccccacaaa |
408 |
Q |
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| T |
7307515 |
aaagctacaaccagagggcattaaggctaaccccacaaa |
7307553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 542 - 647
Target Start/End: Original strand, 7307909 - 7308014
Alignment:
| Q |
542 |
aatctcaacttaccatacacatacgaggatcctaacactattcataatagaggcaacatgacaacttcgaattactcaatcaccatttccataataaaag |
641 |
Q |
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| T |
7307909 |
aatctcaaccaaccatacacatacaaggatcccaacaccattcataacagaggcaatgagacaacttcgatttactcaatcaccatttctacaataaaag |
7308008 |
T |
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| Q |
642 |
attgat |
647 |
Q |
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||||| |
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| T |
7308009 |
cttgat |
7308014 |
T |
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